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The map label for this gene is nrfC [H]

Identifier: 156937594

GI number: 156937594

Start: 707785

End: 708444

Strand: Reverse

Name: nrfC [H]

Synonym: Igni_0801

Alternate gene names: 156937594

Gene position: 708444-707785 (Counterclockwise)

Preceding gene: 156937595

Following gene: 156937592

Centisome position: 54.6

GC content: 55.91

Gene sequence:

>660_bases
GTGATTGCCGTGAAGCCCGCTATGATAATAGACCTCAAGAAGTGCGTGGGCTGCGGAGCCTGTACGGCCGCGTGCGTAAT
GGAGAACCAGTACAAAGAGGGCAAGCCGCTGGAGCTAGGGGTAATAGGGGAGCTACTATCCAAGGTGATCAAGCTGCGCA
AGTACGAAGGGAGCCCGCTGGAGGAGGCCATAAAGAGGGTGGAAAGCGGAGAGAGTCCAGAGGAAGTCCTCGGAAAGCTT
TTCATGACGAGGACTAACGTGATAAGATTGGAATGGGGCAAATACCCCAACGTTAGAGCGGAGTTCTGGCACCGGATATG
TAGGCACTGCGAAGACGCGCCGTGCGCCCACGTGTGCCCGACGAGAGCCACCTACGTTACGAAGGACGGGGTAGTCATGG
TCGATAAGAACAAGTGCATCTTGTGCGGAGCGTGCATAGTTGCGTGTCCATATGCGGCGAGGGGCGTGGACGTATACAGT
AGGGCGGTGGACAAGTGCACCCTCTGTTACCACCGCATAAGGAAGGGGTTGCTTCCGGCTTGCGTGGAGACTTGTCCCAC
GGGAGCGAGGAGCTTCGGCGACTTGGACGATCCGACGTTTGTTAGCAAAATACCGAAGGAGAAACTAGAGGAGGGCGAAC
GCGTCATAATTTTGGAATGA

Upstream 100 bases:

>100_bases
AGTACAAGGACCTAAAGTTCAACGTTCTTCAATCACCGTTCTTGATAGACCCGGTTACGGGCACTCACTTGTTATCGGAC
GTCATAGTAAAGGTGAAGAG

Downstream 100 bases:

>100_bases
GCCTTTCTCCCCTCTTTGGTAAGAAGGCCAAAGCCGCGCCCGAGAGCGCGAGGGAGTAAACGGCTAGCTCCGCCTCGCTC
AAGGAAGGCATGACGAGGCC

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MIAVKPAMIIDLKKCVGCGACTAACVMENQYKEGKPLELGVIGELLSKVIKLRKYEGSPLEEAIKRVESGESPEEVLGKL
FMTRTNVIRLEWGKYPNVRAEFWHRICRHCEDAPCAHVCPTRATYVTKDGVVMVDKNKCILCGACIVACPYAARGVDVYS
RAVDKCTLCYHRIRKGLLPACVETCPTGARSFGDLDDPTFVSKIPKEKLEEGERVIILE

Sequences:

>Translated_219_residues
MIAVKPAMIIDLKKCVGCGACTAACVMENQYKEGKPLELGVIGELLSKVIKLRKYEGSPLEEAIKRVESGESPEEVLGKL
FMTRTNVIRLEWGKYPNVRAEFWHRICRHCEDAPCAHVCPTRATYVTKDGVVMVDKNKCILCGACIVACPYAARGVDVYS
RAVDKCTLCYHRIRKGLLPACVETCPTGARSFGDLDDPTFVSKIPKEKLEEGERVIILE
>Mature_219_residues
MIAVKPAMIIDLKKCVGCGACTAACVMENQYKEGKPLELGVIGELLSKVIKLRKYEGSPLEEAIKRVESGESPEEVLGKL
FMTRTNVIRLEWGKYPNVRAEFWHRICRHCEDAPCAHVCPTRATYVTKDGVVMVDKNKCILCGACIVACPYAARGVDVYS
RAVDKCTLCYHRIRKGLLPACVETCPTGARSFGDLDDPTFVSKIPKEKLEEGERVIILE

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=210, Percent_Identity=31.9047619047619, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI226510944, Length=115, Percent_Identity=40, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787122, Length=196, Percent_Identity=30.6122448979592, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787872, Length=103, Percent_Identity=39.8058252427184, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790326, Length=191, Percent_Identity=30.3664921465969, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1787749, Length=191, Percent_Identity=31.9371727748691, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1787740, Length=139, Percent_Identity=33.0935251798561, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787478, Length=141, Percent_Identity=31.2056737588652, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789370, Length=201, Percent_Identity=30.3482587064677, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI2367245, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789067, Length=198, Percent_Identity=31.8181818181818, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788811, Length=189, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787963, Length=94, Percent_Identity=37.2340425531915, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082180, Length=88, Percent_Identity=38.6363636363636, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87082179, Length=122, Percent_Identity=33.6065573770492, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24298; Mature: 24298

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAVKPAMIIDLKKCVGCGACTAACVMENQYKEGKPLELGVIGELLSKVIKLRKYEGSPL
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCH
EEAIKRVESGESPEEVLGKLFMTRTNVIRLEWGKYPNVRAEFWHRICRHCEDAPCAHVCP
HHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
TRATYVTKDGVVMVDKNKCILCGACIVACPYAARGVDVYSRAVDKCTLCYHRIRKGLLPA
CCCEEEECCCEEEEECCCEEEECHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHCHHHH
CVETCPTGARSFGDLDDPTFVSKIPKEKLEEGERVIILE
HHHHCCCCCCCCCCCCCCHHHHHCCHHHHCCCCEEEEEC
>Mature Secondary Structure
MIAVKPAMIIDLKKCVGCGACTAACVMENQYKEGKPLELGVIGELLSKVIKLRKYEGSPL
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCH
EEAIKRVESGESPEEVLGKLFMTRTNVIRLEWGKYPNVRAEFWHRICRHCEDAPCAHVCP
HHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
TRATYVTKDGVVMVDKNKCILCGACIVACPYAARGVDVYSRAVDKCTLCYHRIRKGLLPA
CCCEEEECCCEEEEECCCEEEECHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHCHHHH
CVETCPTGARSFGDLDDPTFVSKIPKEKLEEGERVIILE
HHHHCCCCCCCCCCCCCCHHHHHCCHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]