Click here to switch to the map view.

The map label for this gene is 156937587

Identifier: 156937587

GI number: 156937587

Start: 702631

End: 703173

Strand: Direct

Name: 156937587

Synonym: Igni_0794

Alternate gene names: NA

Gene position: 702631-703173 (Clockwise)

Preceding gene: 156937586

Following gene: 156937588

Centisome position: 54.15

GC content: 56.17

Gene sequence:

>543_bases
TTGAAGGTTTTAATAACTACAGCCTACTCGCCCTCTCCGAGGACCAGGACGTTCGTCAAAGACTTGGTCTCAGTGCTCCC
CGGCTCCTCTAAGCTTAGCAGAGGAAAGATATCAATGGAGCTCTTAGGAGCAATAGCGGCCGACGAGGGGGCCGACAAGG
TAATAATAGTTAAAGAGTACCACGGGAACCCCTCCTCCCTAGAGGTCTACGACGTCGTGGACGCGGAGCTGGTGCCGAGG
GGAACGATAAAGCTCAAGGGGGTGACCCTCTCGTCCGAAAGGGGTAAGAGAGTATACAATGCGAGGAAGGTAGGCATTAG
GGCTTACTCTCTCATCCCCGAGGCCCAAGAAATGGCTGAGAAGCTTTCGGAGCTGTTGGGTTTGCCGTTAATAGAGAAGG
AAGAAGAGGCGAGCGAGTACGACTTGATACTGGACGTAGAGCCGCACGAAGCGGGCTTCGAAGTGATCTTCAGGACGCCG
GGGTCGCGCGCCCCGGTGGGCCCCTCTTTGAGGGTGAGGGAAGTTGTGGAGGGGGAGGGCTGA

Upstream 100 bases:

>100_bases
GTGCGAGAAGTGCGGCAGAGTCTTCGCGGGGGCGGCTTACGTGCCGGTCTCCGGCCTCAACAAGGCTTGGGGAGCTAAGC
CGGAAAGGAGGTAAGACTTT

Downstream 100 bases:

>100_bases
GATAGAGCTAGACGGGCCTTGCTCCGAGGCAGTCTTAAAGGCGTTGAAGAGGGAAGTACTCGACCCACCCTCAGAGAGGA
GAGTCAGGATATACATGACG

Product: ribosomal biogenesis protein, containing Brix domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKVLITTAYSPSPRTRTFVKDLVSVLPGSSKLSRGKISMELLGAIAADEGADKVIIVKEYHGNPSSLEVYDVVDAELVPR
GTIKLKGVTLSSERGKRVYNARKVGIRAYSLIPEAQEMAEKLSELLGLPLIEKEEEASEYDLILDVEPHEAGFEVIFRTP
GSRAPVGPSLRVREVVEGEG

Sequences:

>Translated_180_residues
MKVLITTAYSPSPRTRTFVKDLVSVLPGSSKLSRGKISMELLGAIAADEGADKVIIVKEYHGNPSSLEVYDVVDAELVPR
GTIKLKGVTLSSERGKRVYNARKVGIRAYSLIPEAQEMAEKLSELLGLPLIEKEEEASEYDLILDVEPHEAGFEVIFRTP
GSRAPVGPSLRVREVVEGEG
>Mature_180_residues
MKVLITTAYSPSPRTRTFVKDLVSVLPGSSKLSRGKISMELLGAIAADEGADKVIIVKEYHGNPSSLEVYDVVDAELVPR
GTIKLKGVTLSSERGKRVYNARKVGIRAYSLIPEAQEMAEKLSELLGLPLIEKEEEASEYDLILDVEPHEAGFEVIFRTP
GSRAPVGPSLRVREVVEGEG

Specific function: Probably involved in the biogenesis of the ribosome [H]

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004154
- InterPro:   IPR007109 [H]

Pfam domain/function: PF04427 Brix [H]

EC number: NA

Molecular weight: Translated: 19620; Mature: 19620

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLITTAYSPSPRTRTFVKDLVSVLPGSSKLSRGKISMELLGAIAADEGADKVIIVKEY
CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEC
HGNPSSLEVYDVVDAELVPRGTIKLKGVTLSSERGKRVYNARKVGIRAYSLIPEAQEMAE
CCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCEEEEECCCCHHHHHH
KLSELLGLPLIEKEEEASEYDLILDVEPHEAGFEVIFRTPGSRAPVGPSLRVREVVEGEG
HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEHHHCCCCC
>Mature Secondary Structure
MKVLITTAYSPSPRTRTFVKDLVSVLPGSSKLSRGKISMELLGAIAADEGADKVIIVKEY
CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEC
HGNPSSLEVYDVVDAELVPRGTIKLKGVTLSSERGKRVYNARKVGIRAYSLIPEAQEMAE
CCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCEEEEECCCCHHHHHH
KLSELLGLPLIEKEEEASEYDLILDVEPHEAGFEVIFRTPGSRAPVGPSLRVREVVEGEG
HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]