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The map label for this gene is 156937575

Identifier: 156937575

GI number: 156937575

Start: 695085

End: 695699

Strand: Reverse

Name: 156937575

Synonym: Igni_0782

Alternate gene names: NA

Gene position: 695699-695085 (Counterclockwise)

Preceding gene: 156937577

Following gene: 156937570

Centisome position: 53.62

GC content: 48.13

Gene sequence:

>615_bases
ATGAATAAACCACCGATAGGTCATACCCGTGGGGCAGCAAGTTTGAGCGCGTCCCCGATGAGGTTTTACTTAGGCCTTCC
GCCCGAAACCTTGAGAAAGCTGATGAAGAGAAAGGACCTCCTCGAAGAAGCCATGAGGCTAACCAAGACCAATATAAGAA
TAGAAGGGGGGAGGGTTATAATAGAGCCTACGGACGAGAGCACCTCTTTAGACCTCTTAAACGCCAAGAACTTGTTGCAA
GCAATAGCTTTGGGCTTCGACATTGAGACCGCCTCGCTACTCTTGAGGGACGAATATGTAATGGAAATAATCGACCTCCG
TGACGTTTTGTTCAGTCGTAAGGACGACAAGGAACTGAGGAGGATCTTGGGGAGGGTTATAGGGAAGCACGGCAAGGCCA
AGAGGAATATAGAGGAAATAGCTAAAGTCAAGTTGAGTATATCTGACGGCATAATAGCGATAATAGGAGAGTACGAAAAC
GTGGAGGCCGCGAAGAGGGCTATAGAGGAGTTAATAGAGGGGAAGATGCACTCGACCGTCTACCGGAACTTGGAGACCTC
GATGAGGTACCTAAAGAGGCGTAACCTAACGAGATATTGGGAAGAGTTCCCTTAA

Upstream 100 bases:

>100_bases
TGCGATAGGCCACGTAACAGCCCGGAGGGTGCTCGTAACCCACGACTACCGCTATTGAGTCCTTCAGCACGAGAAGCCTC
TTGTCCTCTAAGGGCCACAT

Downstream 100 bases:

>100_bases
TTTAGGTATTACCTTCAAAGCTGAGTAGGCCTCGCTGGGCTGCCGAAGGGAGACCTCCAGAGCCACCCTCCAGAGCGCCC
CCTCGAAGGGCTCCGGAGGG

Product: RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MNKPPIGHTRGAASLSASPMRFYLGLPPETLRKLMKRKDLLEEAMRLTKTNIRIEGGRVIIEPTDESTSLDLLNAKNLLQ
AIALGFDIETASLLLRDEYVMEIIDLRDVLFSRKDDKELRRILGRVIGKHGKAKRNIEEIAKVKLSISDGIIAIIGEYEN
VEAAKRAIEELIEGKMHSTVYRNLETSMRYLKRRNLTRYWEEFP

Sequences:

>Translated_204_residues
MNKPPIGHTRGAASLSASPMRFYLGLPPETLRKLMKRKDLLEEAMRLTKTNIRIEGGRVIIEPTDESTSLDLLNAKNLLQ
AIALGFDIETASLLLRDEYVMEIIDLRDVLFSRKDDKELRRILGRVIGKHGKAKRNIEEIAKVKLSISDGIIAIIGEYEN
VEAAKRAIEELIEGKMHSTVYRNLETSMRYLKRRNLTRYWEEFP
>Mature_204_residues
MNKPPIGHTRGAASLSASPMRFYLGLPPETLRKLMKRKDLLEEAMRLTKTNIRIEGGRVIIEPTDESTSLDLLNAKNLLQ
AIALGFDIETASLLLRDEYVMEIIDLRDVLFSRKDDKELRRILGRVIGKHGKAKRNIEEIAKVKLSISDGIIAIIGEYEN
VEAAKRAIEELIEGKMHSTVYRNLETSMRYLKRRNLTRYWEEFP

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

Organism=Homo sapiens, GI10047140, Length=129, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17537417, Length=126, Percent_Identity=34.9206349206349, Blast_Score=73, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6324720, Length=124, Percent_Identity=33.0645161290323, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI20129085, Length=125, Percent_Identity=33.6, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 23408; Mature: 23408

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPPIGHTRGAASLSASPMRFYLGLPPETLRKLMKRKDLLEEAMRLTKTNIRIEGGRVI
CCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCEEEECCEEE
IEPTDESTSLDLLNAKNLLQAIALGFDIETASLLLRDEYVMEIIDLRDVLFSRKDDKELR
EECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RILGRVIGKHGKAKRNIEEIAKVKLSISDGIIAIIGEYENVEAAKRAIEELIEGKMHSTV
HHHHHHHCCCCCCCCCHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
YRNLETSMRYLKRRNLTRYWEEFP
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKPPIGHTRGAASLSASPMRFYLGLPPETLRKLMKRKDLLEEAMRLTKTNIRIEGGRVI
CCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCEEEECCEEE
IEPTDESTSLDLLNAKNLLQAIALGFDIETASLLLRDEYVMEIIDLRDVLFSRKDDKELR
EECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RILGRVIGKHGKAKRNIEEIAKVKLSISDGIIAIIGEYENVEAAKRAIEELIEGKMHSTV
HHHHHHHCCCCCCCCCHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
YRNLETSMRYLKRRNLTRYWEEFP
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]