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The map label for this gene is pcnB1 [H]

Identifier: 156937506

GI number: 156937506

Start: 642480

End: 643250

Strand: Reverse

Name: pcnB1 [H]

Synonym: Igni_0713

Alternate gene names: 156937506

Gene position: 643250-642480 (Counterclockwise)

Preceding gene: 156937508

Following gene: 156937501

Centisome position: 49.57

GC content: 49.29

Gene sequence:

>771_bases
ATGGACGAACCGACCTTTAGGCTCATGTTCCCCCAAGCCAGCAAATTCAAGAAGATATTCCAGCCCCTCACCAAACTCTT
CGAGGCAATGCCCCTCTACGTGACTCAAGAGGGTATAGACATAAAGAGTATGAGTAGCGATAAAAACACTATGGTAATAT
TCACCATGCCTTCTACGTCTTTCGAGGAGTACCAAGTCAATGAAGAAAACGTGGTGGTCAAGATAGATAGCGACGAGTTG
AACAAGGTGGTAAAGAGGGGGACGAAGGACGACGCTGTGATACTAGAGTACTACAAAGGAAGCCCCTACCTACACGTTAA
GTTCTTGAACAGGAAGACTAGCGTGGAAAGGGAGTTCAAGATCCAAGCTTTCGAGGTCCCGGAGGAGGAACACCTAGACG
AACCTCAAGTTCAATTAACCGTTACGGCGAAGATGGACCCCGCTGACCTCCGTCATGTTGTGGCCGACGCGAAGATAGTT
TCTGACGAGGTAGAGGTTTCTACCCCAGACAACGAGACTCTGACATTCGTTTCATTCGAGGCCAACAAGAGCTACGAGGC
CGAGCTGAAGCTCTTCAATCCGTTAGTTAGTTTGGTAGTAGAGAAGGAGGCCAAGGCAAAGTACTCCGTCCAGCACCTCT
ACGACGCTACGAGGGCCTACCAAGCTGCCAAGGAATTAACGTTAGAGTTTGCAACAGATATGCCTATGAAGTTGGAGATG
AGTATGGAAGCGGGCTCCGAGCTCAGGATGTGGATAGCTCCGAGACTCTGA

Upstream 100 bases:

>100_bases
ACTTGCCGCCGTCTACCACGACCTTTATCGTCTTCACGCCTTACTCCCGCCCCCGTTAACCTCAAGAAAGTTAAATAGCA
AACGTCGGCGGAGGAACTCC

Downstream 100 bases:

>100_bases
ACAGATTAACCATACAGCGCTTATCGCTCTTAACGTTAGCGAACTCAACGTTCGTTACTACCACTGGGGCGAGTCCCTTT
TCGGACAGCTCCCTAACCAC

Product: DNA polymerase sliding clamp subunit B

Products: NA

Alternate protein names: Proliferating cell nuclear antigen homolog B1; PCNA B1 [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MDEPTFRLMFPQASKFKKIFQPLTKLFEAMPLYVTQEGIDIKSMSSDKNTMVIFTMPSTSFEEYQVNEENVVVKIDSDEL
NKVVKRGTKDDAVILEYYKGSPYLHVKFLNRKTSVEREFKIQAFEVPEEEHLDEPQVQLTVTAKMDPADLRHVVADAKIV
SDEVEVSTPDNETLTFVSFEANKSYEAELKLFNPLVSLVVEKEAKAKYSVQHLYDATRAYQAAKELTLEFATDMPMKLEM
SMEAGSELRMWIAPRL

Sequences:

>Translated_256_residues
MDEPTFRLMFPQASKFKKIFQPLTKLFEAMPLYVTQEGIDIKSMSSDKNTMVIFTMPSTSFEEYQVNEENVVVKIDSDEL
NKVVKRGTKDDAVILEYYKGSPYLHVKFLNRKTSVEREFKIQAFEVPEEEHLDEPQVQLTVTAKMDPADLRHVVADAKIV
SDEVEVSTPDNETLTFVSFEANKSYEAELKLFNPLVSLVVEKEAKAKYSVQHLYDATRAYQAAKELTLEFATDMPMKLEM
SMEAGSELRMWIAPRL
>Mature_256_residues
MDEPTFRLMFPQASKFKKIFQPLTKLFEAMPLYVTQEGIDIKSMSSDKNTMVIFTMPSTSFEEYQVNEENVVVKIDSDEL
NKVVKRGTKDDAVILEYYKGSPYLHVKFLNRKTSVEREFKIQAFEVPEEEHLDEPQVQLTVTAKMDPADLRHVVADAKIV
SDEVEVSTPDNETLTFVSFEANKSYEAELKLFNPLVSLVVEKEAKAKYSVQHLYDATRAYQAAKELTLEFATDMPMKLEM
SMEAGSELRMWIAPRL

Specific function: Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication [H]

COG id: COG0592

COG function: function code L; DNA polymerase sliding clamp subunit (PCNA homolog)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PCNA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000730
- InterPro:   IPR022659
- InterPro:   IPR022648 [H]

Pfam domain/function: PF00705 PCNA_N [H]

EC number: NA

Molecular weight: Translated: 29417; Mature: 29417

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEPTFRLMFPQASKFKKIFQPLTKLFEAMPLYVTQEGIDIKSMSSDKNTMVIFTMPSTS
CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCCEEEEEECCCCC
FEEYQVNEENVVVKIDSDELNKVVKRGTKDDAVILEYYKGSPYLHVKFLNRKTSVEREFK
CHHEEECCCCEEEEECCHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEE
IQAFEVPEEEHLDEPQVQLTVTAKMDPADLRHVVADAKIVSDEVEVSTPDNETLTFVSFE
EEEEECCHHHCCCCCCEEEEEEECCCHHHHHHHHHHCEEECCCEEEECCCCCEEEEEEEE
ANKSYEAELKLFNPLVSLVVEKEAKAKYSVQHLYDATRAYQAAKELTLEFATDMPMKLEM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
SMEAGSELRMWIAPRL
ECCCCCCEEEEEECCC
>Mature Secondary Structure
MDEPTFRLMFPQASKFKKIFQPLTKLFEAMPLYVTQEGIDIKSMSSDKNTMVIFTMPSTS
CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCCEEEEEECCCCC
FEEYQVNEENVVVKIDSDELNKVVKRGTKDDAVILEYYKGSPYLHVKFLNRKTSVEREFK
CHHEEECCCCEEEEECCHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEE
IQAFEVPEEEHLDEPQVQLTVTAKMDPADLRHVVADAKIVSDEVEVSTPDNETLTFVSFE
EEEEECCHHHCCCCCCEEEEEEECCCHHHHHHHHHHCEEECCCEEEECCCCCEEEEEEEE
ANKSYEAELKLFNPLVSLVVEKEAKAKYSVQHLYDATRAYQAAKELTLEFATDMPMKLEM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
SMEAGSELRMWIAPRL
ECCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]