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The map label for this gene is rps6e [H]

Identifier: 156937470

GI number: 156937470

Start: 610238

End: 610948

Strand: Reverse

Name: rps6e [H]

Synonym: Igni_0677

Alternate gene names: 156937470

Gene position: 610948-610238 (Counterclockwise)

Preceding gene: 156937480

Following gene: 156937469

Centisome position: 47.09

GC content: 55.56

Gene sequence:

>711_bases
TTGCCAAACGTCGCGCGCCCGGTGAGGTTTGAGGTGGCTAAGCTAGAGTTCAAGGTAGTAGTGAACGACCCCGAGGCGGA
GCCCCGCCCCCTCGGGGTAAAAGTGAAAGTAGTTGGTAAGGAAGATATCCCCTTCGATAAGGAGGCAGAGCTCGACCGAA
GGACCCGCCTCCCGGTGGCCCGCGTTAACGCGAGGCTGCTGGAGGCGGCAAAGGCCGAGTACAAGATAATAACGATAAGG
AGAAAGGTGAAGGAGGGAGATGAAGTAAAGAAGAAAACCGTCCACGTCGTCGCCGCAGTCGACGAAAACGTGCCCGAGGG
AGAGGTATGGATAAACAAGGACCTAGCAGTAAACGTATTTGGCGAAGAGAGCTTTGAGGGAGAAGTTTTCAGAACTAAGG
CGTTCCAGATAACTATTGAAGGGGAGAACGCGAGGAAGTTTATAGGCAAGAGGATAGGGGAGACCGTCCCAGCTTCCATC
TTAGGCATAGAGACCCTCAAGGGCCTTCAGCTTGAGATAAGGGGAGGCTCCGACGAGAGCGGGTTCCCGATGAGACCCGA
CATACCGGGCCCCGTCAAGAAGAGGGCTCTGCTCAGCGGACCGCCGGGCTTCTGGCCGCGCGAGAAGGGAGAGAGGAGGA
GGAAGACCGTGAGGGGCAACACCATAAGCGAGGACATAGTTCAGATAAACACCAAAATAGTCAAGCAGTGA

Upstream 100 bases:

>100_bases
GCGGTTTCGGCGAGCCTTATGGCCTCTACCACAGCGTTTACGACCTCATCCCTAAGCAAGCTGTGTACACCTCGAGGGGG
CGCGAGAGATCGTTAATAAC

Downstream 100 bases:

>100_bases
AAGGTCCGAGCCCACTGAGGCACATTTAACCTTCACTCCACGTCCTCTTAGTGGTGTCACGTTGGCAAAGAGGAAAGGGA
CTCGAAGCGAGAAGAGTAAA

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MPNVARPVRFEVAKLEFKVVVNDPEAEPRPLGVKVKVVGKEDIPFDKEAELDRRTRLPVARVNARLLEAAKAEYKIITIR
RKVKEGDEVKKKTVHVVAAVDENVPEGEVWINKDLAVNVFGEESFEGEVFRTKAFQITIEGENARKFIGKRIGETVPASI
LGIETLKGLQLEIRGGSDESGFPMRPDIPGPVKKRALLSGPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ

Sequences:

>Translated_236_residues
MPNVARPVRFEVAKLEFKVVVNDPEAEPRPLGVKVKVVGKEDIPFDKEAELDRRTRLPVARVNARLLEAAKAEYKIITIR
RKVKEGDEVKKKTVHVVAAVDENVPEGEVWINKDLAVNVFGEESFEGEVFRTKAFQITIEGENARKFIGKRIGETVPASI
LGIETLKGLQLEIRGGSDESGFPMRPDIPGPVKKRALLSGPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ
>Mature_235_residues
PNVARPVRFEVAKLEFKVVVNDPEAEPRPLGVKVKVVGKEDIPFDKEAELDRRTRLPVARVNARLLEAAKAEYKIITIRR
KVKEGDEVKKKTVHVVAAVDENVPEGEVWINKDLAVNVFGEESFEGEVFRTKAFQITIEGENARKFIGKRIGETVPASIL
GIETLKGLQLEIRGGSDESGFPMRPDIPGPVKKRALLSGPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6325167, Length=105, Percent_Identity=38.0952380952381, Blast_Score=62, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6319658, Length=105, Percent_Identity=38.0952380952381, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17737290, Length=105, Percent_Identity=38.0952380952381, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282 [H]

Pfam domain/function: PF01092 Ribosomal_S6e [H]

EC number: NA

Molecular weight: Translated: 26437; Mature: 26306

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNVARPVRFEVAKLEFKVVVNDPEAEPRPLGVKVKVVGKEDIPFDKEAELDRRTRLPVA
CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCHH
RVNARLLEAAKAEYKIITIRRKVKEGDEVKKKTVHVVAAVDENVPEGEVWINKDLAVNVF
HHHHHHHHHHCCCEEEEEEEEHHCCCHHHHHEEEEEEEEECCCCCCCCEEECCCEEEEEE
GEESFEGEVFRTKAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDES
CCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHCCCCCHHHEEHHHCCCEEEEEECCCCCC
GFPMRPDIPGPVKKRALLSGPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ
CCCCCCCCCCHHHHCEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PNVARPVRFEVAKLEFKVVVNDPEAEPRPLGVKVKVVGKEDIPFDKEAELDRRTRLPVA
CCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCHH
RVNARLLEAAKAEYKIITIRRKVKEGDEVKKKTVHVVAAVDENVPEGEVWINKDLAVNVF
HHHHHHHHHHCCCEEEEEEEEHHCCCHHHHHEEEEEEEEECCCCCCCCEEECCCEEEEEE
GEESFEGEVFRTKAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDES
CCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHCCCCCHHHEEHHHCCCEEEEEECCCCCC
GFPMRPDIPGPVKKRALLSGPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ
CCCCCCCCCCHHHHCEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA