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The map label for this gene is rpoH [H]

Identifier: 156937445

GI number: 156937445

Start: 590077

End: 590298

Strand: Reverse

Name: rpoH [H]

Synonym: Igni_0652

Alternate gene names: 156937445

Gene position: 590298-590077 (Counterclockwise)

Preceding gene: 156937448

Following gene: 156937444

Centisome position: 45.49

GC content: 55.86

Gene sequence:

>222_bases
TTGGATCACGTCCTCGTCCCTCAACACGTGAAGTTGAGCCCGGAGGAGGCCGTGGAGGAGCTCAGAAAGTGGGGCCTCAG
AGTTGAGCAATTACCCCTGCTGAAGGCGAGCGACCCGGTGGCCAGGGAGCTAGACTTGAAGCCTGGAGACATAGTGAAGA
TAATTAGGAAGAGTGAGAACGCTGAGGAGGTAGTCGTATTTAGGTACGTAGTGGCCGGGTGA

Upstream 100 bases:

>100_bases
CGGCGGCGTGGCAGCTCGCCCGGACCTCGTATTCCATTTTATTACTCCCCCAGCGAGCCCAGAGGGGCGTAGGATGGCTG
GTAAAAAGAAGTTCAGTGTC

Downstream 100 bases:

>100_bases
TGGTCGTGTCGAGCGCGAAGGCCTTCCCCACTCCGGAAGACCGTTGGGCCATAATGCGCGCCTACTTTAAGGAGAAGGGG
CTAGTGAGCCAGCAGCTGGA

Product: DNA-directed RNA polymerase, subunit H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MDHVLVPQHVKLSPEEAVEELRKWGLRVEQLPLLKASDPVARELDLKPGDIVKIIRKSENAEEVVVFRYVVAG

Sequences:

>Translated_73_residues
MDHVLVPQHVKLSPEEAVEELRKWGLRVEQLPLLKASDPVARELDLKPGDIVKIIRKSENAEEVVVFRYVVAG
>Mature_73_residues
MDHVLVPQHVKLSPEEAVEELRKWGLRVEQLPLLKASDPVARELDLKPGDIVKIIRKSENAEEVVVFRYVVAG

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG2012

COG function: function code K; DNA-directed RNA polymerase, subunit H, RpoH/RPB5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoH/eukaryotic RPB5 RNA polymerase subunit family [H]

Homologues:

Organism=Homo sapiens, GI14589951, Length=69, Percent_Identity=47.8260869565217, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17507947, Length=70, Percent_Identity=45.7142857142857, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6319630, Length=66, Percent_Identity=46.969696969697, Blast_Score=63, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020609
- InterPro:   IPR000783
- InterPro:   IPR020608
- ProDom:   PD005155 [H]

Pfam domain/function: PF01191 RNA_pol_Rpb5_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 8284; Mature: 8284

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHVLVPQHVKLSPEEAVEELRKWGLRVEQLPLLKASDPVARELDLKPGDIVKIIRKSEN
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
AEEVVVFRYVVAG
CCCEEEEEEEECC
>Mature Secondary Structure
MDHVLVPQHVKLSPEEAVEELRKWGLRVEQLPLLKASDPVARELDLKPGDIVKIIRKSEN
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
AEEVVVFRYVVAG
CCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA