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The map label for this gene is 156937395

Identifier: 156937395

GI number: 156937395

Start: 539523

End: 540248

Strand: Direct

Name: 156937395

Synonym: Igni_0602

Alternate gene names: NA

Gene position: 539523-540248 (Clockwise)

Preceding gene: 156937392

Following gene: 156937397

Centisome position: 41.58

GC content: 52.34

Gene sequence:

>726_bases
TTGAGACCGCCCAAGTTTGTTCTAGATGAGATAGCGAAAAGCATCGCCGGGGAGATAGCGCTCTCCGACGATCCGGGTTC
GACCTTGAAGAAGTGGAGGGAGATCTTCGAAGTGGGCATAAGGGAGCTGGCGAGAAAGATGAACGTTTCGCCGAGCGTCA
TAAGCGACTACGAGAAGAACAAGAGGGCGCCCGGAAGCAAGTACATCAAGAAGTTCGTGAGGGCCTTAATGGAGATAGAC
GCAGAAAGGGACTGGAAGGTAATAAATTCCTTGGCCCAAAAGATGTTAGGCATAAAGAGCAAGGCGTTGGACATTTATGA
GTATAAAAGGAGCGTGCGCTTGGAGGAATTGGTCAACGCCTCCAAGGGCTACATAGTTAACTCCCGATTCGACCCGAACG
AGGTGGTCTACGGCTTTATCATATTGGATAGCCTCAGAAGCATAGAAGAACTCGACTCTAAGGACTTCTTACTGCTCATG
TCTATGTCGTACAAGAAGGCTTTGGTCTTCACTAAGGTGGGCACCGGGAGGCCGCCGATGGTGGCGGTTAGGATATCCCA
GATAAAGCCGGTCGTGGTCATACTCCACAAGCCGGTCAACTTGGACCGGCTGGCGGTGAGGATAGCCGAAAAAGAGGGGA
TAGCGCTAATAGTCTCCCTGTGCTCCGAGCCGGGCGAGCTCATGGACCGGTTGAGGCTCTTGGACGTTCAACAGCCCTCC
TCTTGA

Upstream 100 bases:

>100_bases
CGGCGCCCGACTCGGGTCCCCGTGGCCCCGGGTTCAAATCCCGGCGGGCCCACCACTCAAAACTCCTACGCGAACTCCTC
TCGGTCTGGGCCCACAAGTA

Downstream 100 bases:

>100_bases
AGCTTGACTATCGCCTCGGCGATGTCCCCCTTCGTCTCGATAAGCGCTTGCTTAGCCTTCTCCGGCGAGCACCCGGTCTG
CTCGACCACGACCTTCACGT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MRPPKFVLDEIAKSIAGEIALSDDPGSTLKKWREIFEVGIRELARKMNVSPSVISDYEKNKRAPGSKYIKKFVRALMEID
AERDWKVINSLAQKMLGIKSKALDIYEYKRSVRLEELVNASKGYIVNSRFDPNEVVYGFIILDSLRSIEELDSKDFLLLM
SMSYKKALVFTKVGTGRPPMVAVRISQIKPVVVILHKPVNLDRLAVRIAEKEGIALIVSLCSEPGELMDRLRLLDVQQPS
S

Sequences:

>Translated_241_residues
MRPPKFVLDEIAKSIAGEIALSDDPGSTLKKWREIFEVGIRELARKMNVSPSVISDYEKNKRAPGSKYIKKFVRALMEID
AERDWKVINSLAQKMLGIKSKALDIYEYKRSVRLEELVNASKGYIVNSRFDPNEVVYGFIILDSLRSIEELDSKDFLLLM
SMSYKKALVFTKVGTGRPPMVAVRISQIKPVVVILHKPVNLDRLAVRIAEKEGIALIVSLCSEPGELMDRLRLLDVQQPS
S
>Mature_241_residues
MRPPKFVLDEIAKSIAGEIALSDDPGSTLKKWREIFEVGIRELARKMNVSPSVISDYEKNKRAPGSKYIKKFVRALMEID
AERDWKVINSLAQKMLGIKSKALDIYEYKRSVRLEELVNASKGYIVNSRFDPNEVVYGFIILDSLRSIEELDSKDFLLLM
SMSYKKALVFTKVGTGRPPMVAVRISQIKPVVVILHKPVNLDRLAVRIAEKEGIALIVSLCSEPGELMDRLRLLDVQQPS
S

Specific function: Unknown

COG id: COG1709

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR017271
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 27280; Mature: 27280

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPPKFVLDEIAKSIAGEIALSDDPGSTLKKWREIFEVGIRELARKMNVSPSVISDYEKN
CCCHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KRAPGSKYIKKFVRALMEIDAERDWKVINSLAQKMLGIKSKALDIYEYKRSVRLEELVNA
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
SKGYIVNSRFDPNEVVYGFIILDSLRSIEELDSKDFLLLMSMSYKKALVFTKVGTGRPPM
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHEEEEEECCCCCCCE
VAVRISQIKPVVVILHKPVNLDRLAVRIAEKEGIALIVSLCSEPGELMDRLRLLDVQQPS
EEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCC
S
C
>Mature Secondary Structure
MRPPKFVLDEIAKSIAGEIALSDDPGSTLKKWREIFEVGIRELARKMNVSPSVISDYEKN
CCCHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KRAPGSKYIKKFVRALMEIDAERDWKVINSLAQKMLGIKSKALDIYEYKRSVRLEELVNA
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
SKGYIVNSRFDPNEVVYGFIILDSLRSIEELDSKDFLLLMSMSYKKALVFTKVGTGRPPM
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHEEEEEECCCCCCCE
VAVRISQIKPVVVILHKPVNLDRLAVRIAEKEGIALIVSLCSEPGELMDRLRLLDVQQPS
EEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]