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The map label for this gene is pqqE [H]

Identifier: 156937191

GI number: 156937191

Start: 350168

End: 351349

Strand: Direct

Name: pqqE [H]

Synonym: Igni_0397

Alternate gene names: 156937191

Gene position: 350168-351349 (Clockwise)

Preceding gene: 156937189

Following gene: 156937192

Centisome position: 26.99

GC content: 57.45

Gene sequence:

>1182_bases
TTGGTGTTCTGGGAGACCACCAAGGCGTGTAAGCTGGTCTGCAAGCACTGCAGGGCGGAGGCGATAGAGGAGCCCTTGCC
GGACGAGCTCACCCACGAGGAGTCCTTGGCTCTAATAGACCAGATAACGGAGTTCGGCCGGCCTTACCCTCACTTGATAA
TGACCGGCGGAGACGTCTTAATGAGGAAGGACTTTTGGGACCTGGCGAGGTACTCCATCTCAAAAGGCATAAGGACCTTG
GTGGCCCCGAGCGTCACCCCTCTCTTAACGGAAGAGAAGATAAAGAAGATGAAGGAAATCGGGATAATCGGGATGAGCCT
CTCCTTGGACGGCGCGAGGGCGGAGACGCACGACTCCATTAGGGGGATAAACGGCATATTCGAAAGGACTGTAGAGCTAA
TGAACTTCGTCAAGAAGGATGTGGGCATGTTCCTCCAGATAAACACGGCGGTAATGAGGGACAACGTAGAGGAGCTCCCG
GAGGTTTTCAAGCTCATAACGGACGCCGGAGTGGACGCTTGGGAGGTCTTCTACCTAATACTGACGGGAAGGGCCTCCAA
GGATTTGGACCTCACTAAGGATGAATATTGGGACGTCTCCAACTTCTTGTACGACGCCTCCAAGTACGGGAAGACCACCA
TAAGGACCACCGAGGGCCCCTTCTTCCGGGTCGTGTACCGGCTTAGGACCGTCTTGGACGAGATGGGCAAGGGGCCCGAG
GAGCTGGGGGTGGGGGAGTTATACTACAAGCTTAGGGAGAGGCTGGAAGAGCTAATGGGTCCGGTGCCCCACGGGCCGCC
CAAGCAGAAGAGGGCCCCCTCGGCCTACACTAGGGACGGCTACGGGATAATCTTCGTGGCCTACAACGGGGACGTCTACC
CCTCCGGCTTCCTCCCGTACAAAGTTGGGAACGTGAGGGAGGCGAGCTTAAAGGAGATCTATCAGAACAGCAAGGCCCTT
AAGATGATAAGGGACCCGAGCAACTTCAGGCCCCCGTGCGGGACTTGCAAGTTCAACTTCATGTGTGGGGGGTCGAGGGC
GAGGGCGTACTCTTACTTCAAGGACCCCTTCGGCCACGACCCGGCTTGCAAGCTCCCGGAGGTGCTGGAGTCCTTAGACC
CCCAGGTGGTCGAGGAGGCCCTCAGGCCCTTCGGAAGGGCGAAAAGCTTCACCAACGTCTGA

Upstream 100 bases:

>100_bases
AGGTTTAGACTCCAAATGCTTACTGAGAATAACCTCGTCGCTCCGCCCCTCCTGGGGATGAGCCGTCAGAGGCGGCTGGA
ACTTCGAGGAGAAGCCGCTG

Downstream 100 bases:

>100_bases
GGCCCGGGACTGCCTTGAAGGTCCTCAAGTTTTCCAAGCTCTATGTCGGCGACGGTTCGGTCTTGAAGGACGTGTACGTG
GGTTTCGAAGGGGAAGAGAT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MVFWETTKACKLVCKHCRAEAIEEPLPDELTHEESLALIDQITEFGRPYPHLIMTGGDVLMRKDFWDLARYSISKGIRTL
VAPSVTPLLTEEKIKKMKEIGIIGMSLSLDGARAETHDSIRGINGIFERTVELMNFVKKDVGMFLQINTAVMRDNVEELP
EVFKLITDAGVDAWEVFYLILTGRASKDLDLTKDEYWDVSNFLYDASKYGKTTIRTTEGPFFRVVYRLRTVLDEMGKGPE
ELGVGELYYKLRERLEELMGPVPHGPPKQKRAPSAYTRDGYGIIFVAYNGDVYPSGFLPYKVGNVREASLKEIYQNSKAL
KMIRDPSNFRPPCGTCKFNFMCGGSRARAYSYFKDPFGHDPACKLPEVLESLDPQVVEEALRPFGRAKSFTNV

Sequences:

>Translated_393_residues
MVFWETTKACKLVCKHCRAEAIEEPLPDELTHEESLALIDQITEFGRPYPHLIMTGGDVLMRKDFWDLARYSISKGIRTL
VAPSVTPLLTEEKIKKMKEIGIIGMSLSLDGARAETHDSIRGINGIFERTVELMNFVKKDVGMFLQINTAVMRDNVEELP
EVFKLITDAGVDAWEVFYLILTGRASKDLDLTKDEYWDVSNFLYDASKYGKTTIRTTEGPFFRVVYRLRTVLDEMGKGPE
ELGVGELYYKLRERLEELMGPVPHGPPKQKRAPSAYTRDGYGIIFVAYNGDVYPSGFLPYKVGNVREASLKEIYQNSKAL
KMIRDPSNFRPPCGTCKFNFMCGGSRARAYSYFKDPFGHDPACKLPEVLESLDPQVVEEALRPFGRAKSFTNV
>Mature_393_residues
MVFWETTKACKLVCKHCRAEAIEEPLPDELTHEESLALIDQITEFGRPYPHLIMTGGDVLMRKDFWDLARYSISKGIRTL
VAPSVTPLLTEEKIKKMKEIGIIGMSLSLDGARAETHDSIRGINGIFERTVELMNFVKKDVGMFLQINTAVMRDNVEELP
EVFKLITDAGVDAWEVFYLILTGRASKDLDLTKDEYWDVSNFLYDASKYGKTTIRTTEGPFFRVVYRLRTVLDEMGKGPE
ELGVGELYYKLRERLEELMGPVPHGPPKQKRAPSAYTRDGYGIIFVAYNGDVYPSGFLPYKVGNVREASLKEIYQNSKAL
KMIRDPSNFRPPCGTCKFNFMCGGSRARAYSYFKDPFGHDPACKLPEVLESLDPQVVEEALRPFGRAKSFTNV

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 44580; Mature: 44580

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFWETTKACKLVCKHCRAEAIEEPLPDELTHEESLALIDQITEFGRPYPHLIMTGGDVL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHCCCCCEEEEECCCCE
MRKDFWDLARYSISKGIRTLVAPSVTPLLTEEKIKKMKEIGIIGMSLSLDGARAETHDSI
EHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHH
RGINGIFERTVELMNFVKKDVGMFLQINTAVMRDNVEELPEVFKLITDAGVDAWEVFYLI
HHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHH
LTGRASKDLDLTKDEYWDVSNFLYDASKYGKTTIRTTEGPFFRVVYRLRTVLDEMGKGPE
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCHH
ELGVGELYYKLRERLEELMGPVPHGPPKQKRAPSAYTRDGYGIIFVAYNGDVYPSGFLPY
HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
KVGNVREASLKEIYQNSKALKMIRDPSNFRPPCGTCKFNFMCGGSRARAYSYFKDPFGHD
CCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCC
PACKLPEVLESLDPQVVEEALRPFGRAKSFTNV
CCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVFWETTKACKLVCKHCRAEAIEEPLPDELTHEESLALIDQITEFGRPYPHLIMTGGDVL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHHHHHHHCCCCCEEEEECCCCE
MRKDFWDLARYSISKGIRTLVAPSVTPLLTEEKIKKMKEIGIIGMSLSLDGARAETHDSI
EHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHH
RGINGIFERTVELMNFVKKDVGMFLQINTAVMRDNVEELPEVFKLITDAGVDAWEVFYLI
HHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHH
LTGRASKDLDLTKDEYWDVSNFLYDASKYGKTTIRTTEGPFFRVVYRLRTVLDEMGKGPE
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCHH
ELGVGELYYKLRERLEELMGPVPHGPPKQKRAPSAYTRDGYGIIFVAYNGDVYPSGFLPY
HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
KVGNVREASLKEIYQNSKALKMIRDPSNFRPPCGTCKFNFMCGGSRARAYSYFKDPFGHD
CCCCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCC
PACKLPEVLESLDPQVVEEALRPFGRAKSFTNV
CCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]