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The map label for this gene is rpl13e [H]

Identifier: 156937181

GI number: 156937181

Start: 340953

End: 341243

Strand: Direct

Name: rpl13e [H]

Synonym: Igni_0387

Alternate gene names: 156937181

Gene position: 340953-341243 (Clockwise)

Preceding gene: 156937172

Following gene: 156937182

Centisome position: 26.28

GC content: 57.04

Gene sequence:

>291_bases
TTGGAGGCCGTTTCAGTTATTTTAACCTCCCTTGGAGGGGCCCTGAGGGGAAGGGAAGTGGAGGAGAGGCCGGTGGCCTA
CGTTTTGACGCCCGTATTGAGGAAGGACGCCGGTAAGAAGCCCAAGATGAGGAGGGGAAGGGGCTTCAGCAAGGGCGAGC
TCGAAGCAGTGGGGCTGGACTTCAAGAAGGCCCTCAAGATGGGGATACCTATAGACAAGAGGAGGAAGACCGTACACGAG
TGGAACGTGGAAGCCTTGAAGAAGTGGTTGTCCCAGAAGGGCGGGGAATGA

Upstream 100 bases:

>100_bases
ATCACGTACCCGGGCTTGGGGACCTTTGGCGTGGCCCCCACCACCGCCACAGAAGAGGGCTTGAAGAGGAAGTCCAAGCG
CTCCTTCCCCGACCTCTTCC

Downstream 100 bases:

>100_bases
GGAGGAAGCTCTTCTTCGCGGTCTTAATGTTGTGGGTAATAGGCGTCATAAGCCTCCTTTACCTCTACTGGTCGCTCTGG
GCCTCGGTGATCCGTTGAGG

Product: 50S ribosomal protein L13e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MEAVSVILTSLGGALRGREVEERPVAYVLTPVLRKDAGKKPKMRRGRGFSKGELEAVGLDFKKALKMGIPIDKRRKTVHE
WNVEALKKWLSQKGGE

Sequences:

>Translated_96_residues
MEAVSVILTSLGGALRGREVEERPVAYVLTPVLRKDAGKKPKMRRGRGFSKGELEAVGLDFKKALKMGIPIDKRRKTVHE
WNVEALKKWLSQKGGE
>Mature_96_residues
MEAVSVILTSLGGALRGREVEERPVAYVLTPVLRKDAGKKPKMRRGRGFSKGELEAVGLDFKKALKMGIPIDKRRKTVHE
WNVEALKKWLSQKGGE

Specific function: Unknown

COG id: COG4352

COG function: function code J; Ribosomal protein L13E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L13e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001380
- InterPro:   IPR023004
- InterPro:   IPR018256 [H]

Pfam domain/function: PF01294 Ribosomal_L13e [H]

EC number: NA

Molecular weight: Translated: 10729; Mature: 10729

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAVSVILTSLGGALRGREVEERPVAYVLTPVLRKDAGKKPKMRRGRGFSKGELEAVGLD
CHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCC
FKKALKMGIPIDKRRKTVHEWNVEALKKWLSQKGGE
HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MEAVSVILTSLGGALRGREVEERPVAYVLTPVLRKDAGKKPKMRRGRGFSKGELEAVGLD
CHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCC
FKKALKMGIPIDKRRKTVHEWNVEALKKWLSQKGGE
HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]