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The map label for this gene is radA [C]

Identifier: 156937100

GI number: 156937100

Start: 261315

End: 262178

Strand: Direct

Name: radA [C]

Synonym: Igni_0306

Alternate gene names: 156937100

Gene position: 261315-262178 (Clockwise)

Preceding gene: 156937096

Following gene: 156937102

Centisome position: 20.14

GC content: 54.86

Gene sequence:

>864_bases
GTGGCGCTCATCGCCCTGAACTTAAAACGGGGGTCAAGCTATGTAGCTGAAGCGGTGACGAAAGTGAGGCTCAGAACCGG
CGTGGAGGGCTTCGACGACCTGATAGCCGGCGGGATACCCAAGGGCTTCTTGGTGGCGGTCGTCGGGGAGCCCGGCACGG
GGAAGACGGTCTTCAGCATCCACTTCGCGTGGAAGGGGGTGTTAGACGGCCAGAAGGTGATATACGTAACCACCGAGGAG
AGCAGGGAAAGCATAATTTCCCAAGCAGCTCAATTCGGGATGAACTTCAACAAGGCCATAGAAGAAAAGAAGATGGTCAT
CATAGACGCGTTGCTCAGGGACAAGGCCGACCAGTGGAACATGGTAGAGCTGACCGTCGAAGAGCTCCTAAACAAGATAA
TTGAAGCTAAGAAGTACTTGGGATACGGCGACGCGAGGGTAGTGATAGACTCCATGAGCGCCTTCTGGCTCGACAAGCCA
GCGATGGCCAGGAAGTACAGTTACTTGGTGAAGAGAGTATTAAACAAGTGGAACATGACAATAGTGGCCACCAGCCAATA
CGCGATTACCACCTCCTTCGGCTTCGGTTTCGGCATAGAGCACGTGGCGGACGGAATAATAAGGTTCAAGAAGATGATAA
AGGGATGGGAGCTCAAGAGGTACGTTATAGTGGAGAAGATGAGACAGACTCCCCACTCCTTGAGGGTCCACGAGATAGAG
ATAGTGGACGGAAAGGGGATGAGGGTCAAGGGGCCGGTGGAGTACACGAGGGACGAGGTGACCCTCCCCTCCAAGGTGGT
CGAAGGGGTGAAGAGGGGGTTGGCCCGGAAGGCCTTGGAGGAGCGCTTGATGGAGCTGGACTAG

Upstream 100 bases:

>100_bases
TGTGGGCAAATATGAAAAAGGAAATTAACAAATATAAAAGTTTGGTAATGAGTTATGCGGGCTCGCTTACGGAATTCGTC
GTCACCGCTCCGGCCGGGGA

Downstream 100 bases:

>100_bases
CCAGTTAGGTCCAGCTTGGTGTAGCTTCCCAAGATCTTCAAGAACGAGGATATCTTGGATGCCTCCTCCAACACCTCCTT
GAGGGCCTCCCGGGAGCCCT

Product: circadian clock protein, KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MALIALNLKRGSSYVAEAVTKVRLRTGVEGFDDLIAGGIPKGFLVAVVGEPGTGKTVFSIHFAWKGVLDGQKVIYVTTEE
SRESIISQAAQFGMNFNKAIEEKKMVIIDALLRDKADQWNMVELTVEELLNKIIEAKKYLGYGDARVVIDSMSAFWLDKP
AMARKYSYLVKRVLNKWNMTIVATSQYAITTSFGFGFGIEHVADGIIRFKKMIKGWELKRYVIVEKMRQTPHSLRVHEIE
IVDGKGMRVKGPVEYTRDEVTLPSKVVEGVKRGLARKALEERLMELD

Sequences:

>Translated_287_residues
MALIALNLKRGSSYVAEAVTKVRLRTGVEGFDDLIAGGIPKGFLVAVVGEPGTGKTVFSIHFAWKGVLDGQKVIYVTTEE
SRESIISQAAQFGMNFNKAIEEKKMVIIDALLRDKADQWNMVELTVEELLNKIIEAKKYLGYGDARVVIDSMSAFWLDKP
AMARKYSYLVKRVLNKWNMTIVATSQYAITTSFGFGFGIEHVADGIIRFKKMIKGWELKRYVIVEKMRQTPHSLRVHEIE
IVDGKGMRVKGPVEYTRDEVTLPSKVVEGVKRGLARKALEERLMELD
>Mature_286_residues
ALIALNLKRGSSYVAEAVTKVRLRTGVEGFDDLIAGGIPKGFLVAVVGEPGTGKTVFSIHFAWKGVLDGQKVIYVTTEES
RESIISQAAQFGMNFNKAIEEKKMVIIDALLRDKADQWNMVELTVEELLNKIIEAKKYLGYGDARVVIDSMSAFWLDKPA
MARKYSYLVKRVLNKWNMTIVATSQYAITTSFGFGFGIEHVADGIIRFKKMIKGWELKRYVIVEKMRQTPHSLRVHEIEI
VDGKGMRVKGPVEYTRDEVTLPSKVVEGVKRGLARKALEERLMELD

Specific function: May Play A Role In The Repair Of Endogenous Alkylation Damage. [C]

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 kaiC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR010624
- InterPro:   IPR022475 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 32307; Mature: 32176

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALIALNLKRGSSYVAEAVTKVRLRTGVEGFDDLIAGGIPKGFLVAVVGEPGTGKTVFSI
CEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEE
HFAWKGVLDGQKVIYVTTEESRESIISQAAQFGMNFNKAIEEKKMVIIDALLRDKADQWN
EEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
MVELTVEELLNKIIEAKKYLGYGDARVVIDSMSAFWLDKPAMARKYSYLVKRVLNKWNMT
HHHHHHHHHHHHHHHHHHHCCCCCHHEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHCCEE
IVATSQYAITTSFGFGFGIEHVADGIIRFKKMIKGWELKRYVIVEKMRQTPHSLRVHEIE
EEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEE
IVDGKGMRVKGPVEYTRDEVTLPSKVVEGVKRGLARKALEERLMELD
EECCCCCEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALIALNLKRGSSYVAEAVTKVRLRTGVEGFDDLIAGGIPKGFLVAVVGEPGTGKTVFSI
EEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEE
HFAWKGVLDGQKVIYVTTEESRESIISQAAQFGMNFNKAIEEKKMVIIDALLRDKADQWN
EEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
MVELTVEELLNKIIEAKKYLGYGDARVVIDSMSAFWLDKPAMARKYSYLVKRVLNKWNMT
HHHHHHHHHHHHHHHHHHHCCCCCHHEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHCCEE
IVATSQYAITTSFGFGFGIEHVADGIIRFKKMIKGWELKRYVIVEKMRQTPHSLRVHEIE
EEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEE
IVDGKGMRVKGPVEYTRDEVTLPSKVVEGVKRGLARKALEERLMELD
EECCCCCEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]