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The map label for this gene is rpoN [H]

Identifier: 156936982

GI number: 156936982

Start: 163547

End: 163753

Strand: Direct

Name: rpoN [H]

Synonym: Igni_0187

Alternate gene names: 156936982

Gene position: 163547-163753 (Clockwise)

Preceding gene: 156936981

Following gene: 156936983

Centisome position: 12.6

GC content: 53.14

Gene sequence:

>207_bases
ATGCTCCCAATTCGTTGTTACACTTGCGGGAGGCCTTTGTGGCCGGAGTACGAGGAGTTCTTGCGGAGGGTCGAGGCCGG
CGAGGAGCCGGGCAAGGTATTGGACGACTTGGGGATAAAGAGGTACTGTTGTAGAAGGACTATGCTCTCAGCAGTCGACA
TATCGAAGGAGATTATTAAGTTCAGTACGCGTGTTCACAGGTGGTAG

Upstream 100 bases:

>100_bases
CACATGCTGTCCGGCGACCCGAGGAGGACGGAGCCGGAGAAGTGGATGAGGTACTCCGCCAGGAGGAGGAAGCAGAAGAG
CTATAGGTGAGGCTCCCTTG

Downstream 100 bases:

>100_bases
CCGTGAGCGCGGAGACGGGCGAGAAGGTTGTAGAGTTACTAATACCCTTGGAGATGTACCTACAACACGGTGTGCATATA
GGTACTAAAATGGTAACTAA

Product: DNA-directed RNA polymerase subunit N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MLPIRCYTCGRPLWPEYEEFLRRVEAGEEPGKVLDDLGIKRYCCRRTMLSAVDISKEIIKFSTRVHRW

Sequences:

>Translated_68_residues
MLPIRCYTCGRPLWPEYEEFLRRVEAGEEPGKVLDDLGIKRYCCRRTMLSAVDISKEIIKFSTRVHRW
>Mature_68_residues
MLPIRCYTCGRPLWPEYEEFLRRVEAGEEPGKVLDDLGIKRYCCRRTMLSAVDISKEIIKFSTRVHRW

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1644

COG function: function code K; DNA-directed RNA polymerase, subunit N (RpoN/RPB10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoN/eukaryotic RPB10 RNA polymerase subunit family [H]

Homologues:

Organism=Homo sapiens, GI10863925, Length=62, Percent_Identity=38.7096774193548, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24649759, Length=62, Percent_Identity=40.3225806451613, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR000268
- InterPro:   IPR020789
- ProDom:   PD006539 [H]

Pfam domain/function: PF01194 RNA_pol_N [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 8119; Mature: 8119

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPIRCYTCGRPLWPEYEEFLRRVEAGEEPGKVLDDLGIKRYCCRRTMLSAVDISKEIIK
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSTRVHRW
HHHHHCCC
>Mature Secondary Structure
MLPIRCYTCGRPLWPEYEEFLRRVEAGEEPGKVLDDLGIKRYCCRRTMLSAVDISKEIIK
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSTRVHRW
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA