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The map label for this gene is rps4p

Identifier: 156936976

GI number: 156936976

Start: 160502

End: 161002

Strand: Direct

Name: rps4p

Synonym: Igni_0181

Alternate gene names: 156936976

Gene position: 160502-161002 (Clockwise)

Preceding gene: 156936975

Following gene: 156936977

Centisome position: 12.37

GC content: 56.69

Gene sequence:

>501_bases
ATGGGAGACCCGCGCAAGCCTAGGAAGAAGTGGTCTCCTCCCGGTCACCCGTGGGTTAAGGAGAGGCTAATCGAAGAAAT
GAAACTAATGGGTGAGTACGGACTGAGGAACAAGAGGGAGATTTGGATCGCCGCGGCGATGTTAAGGAGGTACCGCCACC
GCGCGAGGGAGCTGCTAGCGTTGCCGGCCGAGGTGAGGGAAAAGGAGGAGAAGGCACTTCTGAAGAGGCTCTACGACTTG
GGCTTGGTTGATGAGAACGCAACCCTCGACGATGTACTGTCCCTCACTGTTAGGGACTTATTGGAGAGGAGGTTGCAGAC
GGTCGTCTACAAGAAGGGCTTGGCAAAGAGCATATACCACGCTCGCCAGCTCGTGACGCACGGCCACATAGCCATAAACG
GCAGGAGGGTCACCAGCCCGGGGTACATAGTGAGGAGGGACGAGGAGGAGTTGATAGGCTACGCCCCCACTAGCCCGTAC
TTCAAAAAGGCACAGCAGTAA

Upstream 100 bases:

>100_bases
ACAGCCTAGGCTTGAAGGTTAGGGGCCAGAGGACCGCTACCACCGGTAGGCTTGGCATGACGGTAGGCGTCAGCAAGAAG
TCCAGGTGAGGTGAGAGGTA

Downstream 100 bases:

>100_bases
CGGCGGGGGGTCGTGAGCCGTGCCAAAGGAAATAAGGTGGGGGGTCGCGCACATATTCAGTTCCCCCAACAACACTTTCG
TCCACATAACTGACATCACC

Product: 30S ribosomal protein S4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MGDPRKPRKKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAEVREKEEKALLKRLYDL
GLVDENATLDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY
FKKAQQ

Sequences:

>Translated_166_residues
MGDPRKPRKKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAEVREKEEKALLKRLYDL
GLVDENATLDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY
FKKAQQ
>Mature_165_residues
GDPRKPRKKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPAEVREKEEKALLKRLYDLG
LVDENATLDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPYF
KKAQQ

Specific function: With S5 and S12 plays an important role in translational accuracy

COG id: COG0522

COG function: function code J; Ribosomal protein S4 and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI14141193, Length=156, Percent_Identity=48.0769230769231, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17535707, Length=150, Percent_Identity=48.6666666666667, Blast_Score=125, Evalue=9e-30,
Organism=Saccharomyces cerevisiae, GI6319666, Length=163, Percent_Identity=47.8527607361963, Blast_Score=134, Evalue=6e-33,
Organism=Saccharomyces cerevisiae, GI6325176, Length=163, Percent_Identity=47.239263803681, Blast_Score=133, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24661711, Length=159, Percent_Identity=46.5408805031447, Blast_Score=128, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24661707, Length=159, Percent_Identity=46.5408805031447, Blast_Score=128, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24661715, Length=134, Percent_Identity=50, Blast_Score=109, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4_IGNH4 (A8A8W3)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001434772.1
- ProteinModelPortal:   A8A8W3
- SMR:   A8A8W3
- STRING:   A8A8W3
- GeneID:   5562323
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0181
- eggNOG:   arNOG08837
- HOGENOM:   HBG588353
- OMA:   RNKRELW
- ProtClustDB:   PRK04051
- BioCyc:   IHOS453591:IGNI_0181-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01306_A
- InterPro:   IPR022801
- InterPro:   IPR005710
- InterPro:   IPR001912
- InterPro:   IPR022802
- InterPro:   IPR018079
- InterPro:   IPR002942
- PANTHER:   PTHR11831
- SMART:   SM00363
- TIGRFAMs:   TIGR01018

Pfam domain/function: PF00163 Ribosomal_S4; PF01479 S4

EC number: NA

Molecular weight: Translated: 19439; Mature: 19308

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS00632 RIBOSOMAL_S4; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDPRKPRKKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LPAEVREKEEKALLKRLYDLGLVDENATLDDVLSLTVRDLLERRLQTVVYKKGLAKSIYH
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPYFKKAQQ
HHHHHHCCCEEECCEEECCCCEEEECCHHHHHCCCCCCHHHHHCCC
>Mature Secondary Structure 
GDPRKPRKKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LPAEVREKEEKALLKRLYDLGLVDENATLDDVLSLTVRDLLERRLQTVVYKKGLAKSIYH
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPYFKKAQQ
HHHHHHCCCEEECCEEECCCCEEEECCHHHHHCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA