Click here to switch to the map view.

The map label for this gene is 156936856

Identifier: 156936856

GI number: 156936856

Start: 57314

End: 58639

Strand: Direct

Name: 156936856

Synonym: Igni_0061

Alternate gene names: NA

Gene position: 57314-58639 (Clockwise)

Preceding gene: 156936855

Following gene: 156936859

Centisome position: 4.42

GC content: 54.22

Gene sequence:

>1326_bases
ATGGTAAAATATATCATCAAAGCCCTCGTAGAGGTTGACGGTCCCGTTGACGAGCACGACATCATAGGTGCCATATTCGG
GCAGACCGAAGGCCTCCTGGACGATTTCGACTTAAGGGAGTTGCAAGAGAAGGGCCGTATCGGCCGTATACTCGTTAAGC
TGCAGAGGAGGGGGAACAAGGCGGTAGGCGAGATTTACGTGCCCTCCAACTTGGACCGGGTGGAGACGGCCCTCGTCGCA
GCGATGCTGGAGTCAGTCGACAAGGTCGGGCCCTATCCTGCCCGCATAAGCGTGGTTGAGATAATAGACGTGCGCGCCGA
GAAGATAAAGAAGATAATAGAGAGGGCTAAAGAAATATTGAAGAAGTGGAGTCAAGAGAAGAGTGTCGACATAAGGGAAA
TATTGAAAGAGATAAGCGAGACCACGAAAAAGTCCCAACTGATAGAGTACGGCCCCGAGAAACTCCCGGCCGGCCCGGGC
GTGGAGCGCTCGGACACGATAATCATAGTCGAGGGGAGGGCGGACGTGTTGAACTTGTTGAGGTACGGCTACGATAACGT
GATCGCCTTGGGAGGGGCAACCACTAAGGTGCCCGAAACGATAAAGAAATTAGCTAAGGAGAAGATAGCGATAGCCTTCG
TGGACGGCGACAGAGGGGGGTTGATGGTACTGAAGAACTTGCTCTCCCAAGCAGACATAGACTACGTGGCCAGAGCGCCC
CCGGGCAAGGAAGTGGAGGACTTGACCGCTAGAGAGATCGCCAAGTCGCTTAGCAACTTAATACCGGCAAGCAAGATGAA
AGAGGAGTTATTGAAGGTAGAGAAGTTACAGAAGGAGGAGGTCAAGGAGGTAGCAGAGAAAGCAGAAAAGGTTGAGGCCG
AAGAGGTCGTGAAGAAAGAGGAAGTAGCCGAAAGGGGTGAGGAGATGGAGAGTAAGGCCGAGGGCGCCGAACAGCCTACG
GCGACGGCGCTCGAGAAGGCGGCCGCTAAGGAAGAAGTAAAGCAAGAGGTCAAGACCGAGGAAGAGAAGGTCAAGGAATA
CGTAATGTTCATCCCCGACAGCGTGTTCGAGAAGGCTAAAGAAATCACGGGGACCTTGAGGTCCGTCCTCTACGACTCCC
AGTGGAACATCGTCGCCGAGGTGCCCGCGAAGGACGTGGTCAGCGCCATAGAGGAGAAGGGCGCGTACGCCGTGCTTCAC
GACGGAGTCATAACTCAGAGGATGTTGGACGTGATGAGCTTGAAGGGAGGCCGATTGATACTGGGGAGGAGGGTAGCTAG
GGTCAGCAAGAGGCCTAAGGGCGTGTTCGTAGTCCTCTTGAGTTAA

Upstream 100 bases:

>100_bases
AGTGAAGATGGAGGAACTCTTGAAACAAGACGCCATCATTTAAAAATCGGGCCGTTAAAGAGTATGTGGAACAGAATCGA
TTTGGTATGAGGGAGGGATT

Downstream 100 bases:

>100_bases
TCTCTCCTTATTACTTGTTTATGAACTTCCAAAGGCCGTCTTTCCTCCCCTTGAGCCTAGCCTCAGTGATCCCGAAGTAT
CCCAATATCCTCATGGCTGC

Product: DNA primase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MVKYIIKALVEVDGPVDEHDIIGAIFGQTEGLLDDFDLRELQEKGRIGRILVKLQRRGNKAVGEIYVPSNLDRVETALVA
AMLESVDKVGPYPARISVVEIIDVRAEKIKKIIERAKEILKKWSQEKSVDIREILKEISETTKKSQLIEYGPEKLPAGPG
VERSDTIIIVEGRADVLNLLRYGYDNVIALGGATTKVPETIKKLAKEKIAIAFVDGDRGGLMVLKNLLSQADIDYVARAP
PGKEVEDLTAREIAKSLSNLIPASKMKEELLKVEKLQKEEVKEVAEKAEKVEAEEVVKKEEVAERGEEMESKAEGAEQPT
ATALEKAAAKEEVKQEVKTEEEKVKEYVMFIPDSVFEKAKEITGTLRSVLYDSQWNIVAEVPAKDVVSAIEEKGAYAVLH
DGVITQRMLDVMSLKGGRLILGRRVARVSKRPKGVFVVLLS

Sequences:

>Translated_441_residues
MVKYIIKALVEVDGPVDEHDIIGAIFGQTEGLLDDFDLRELQEKGRIGRILVKLQRRGNKAVGEIYVPSNLDRVETALVA
AMLESVDKVGPYPARISVVEIIDVRAEKIKKIIERAKEILKKWSQEKSVDIREILKEISETTKKSQLIEYGPEKLPAGPG
VERSDTIIIVEGRADVLNLLRYGYDNVIALGGATTKVPETIKKLAKEKIAIAFVDGDRGGLMVLKNLLSQADIDYVARAP
PGKEVEDLTAREIAKSLSNLIPASKMKEELLKVEKLQKEEVKEVAEKAEKVEAEEVVKKEEVAERGEEMESKAEGAEQPT
ATALEKAAAKEEVKQEVKTEEEKVKEYVMFIPDSVFEKAKEITGTLRSVLYDSQWNIVAEVPAKDVVSAIEEKGAYAVLH
DGVITQRMLDVMSLKGGRLILGRRVARVSKRPKGVFVVLLS
>Mature_441_residues
MVKYIIKALVEVDGPVDEHDIIGAIFGQTEGLLDDFDLRELQEKGRIGRILVKLQRRGNKAVGEIYVPSNLDRVETALVA
AMLESVDKVGPYPARISVVEIIDVRAEKIKKIIERAKEILKKWSQEKSVDIREILKEISETTKKSQLIEYGPEKLPAGPG
VERSDTIIIVEGRADVLNLLRYGYDNVIALGGATTKVPETIKKLAKEKIAIAFVDGDRGGLMVLKNLLSQADIDYVARAP
PGKEVEDLTAREIAKSLSNLIPASKMKEELLKVEKLQKEEVKEVAEKAEKVEAEEVVKKEEVAERGEEMESKAEGAEQPT
ATALEKAAAKEEVKQEVKTEEEKVKEYVMFIPDSVFEKAKEITGTLRSVLYDSQWNIVAEVPAKDVVSAIEEKGAYAVLH
DGVITQRMLDVMSLKGGRLILGRRVARVSKRPKGVFVVLLS

Specific function: Unknown

COG id: COG0358

COG function: function code L; DNA primase (bacterial type)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0095 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y061_IGNH4 (A8A8J3)

Other databases:

- EMBL:   CP000816
- RefSeq:   YP_001434652.1
- ProteinModelPortal:   A8A8J3
- STRING:   A8A8J3
- GeneID:   5561902
- GenomeReviews:   CP000816_GR
- KEGG:   iho:Igni_0061
- eggNOG:   arNOG04629
- HOGENOM:   HBG541216
- OMA:   EMELIEY
- ProtClustDB:   PRK04031
- BioCyc:   IHOS453591:IGNI_0061-MONOMER
- HAMAP:   MF_00007
- InterPro:   IPR006171
- InterPro:   IPR020607
- SMART:   SM00493

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48917; Mature: 48917

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKYIIKALVEVDGPVDEHDIIGAIFGQTEGLLDDFDLRELQEKGRIGRILVKLQRRGNK
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCC
AVGEIYVPSNLDRVETALVAAMLESVDKVGPYPARISVVEIIDVRAEKIKKIIERAKEIL
CCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KKWSQEKSVDIREILKEISETTKKSQLIEYGPEKLPAGPGVERSDTIIIVEGRADVLNLL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEEEECCHHHHHHH
RYGYDNVIALGGATTKVPETIKKLAKEKIAIAFVDGDRGGLMVLKNLLSQADIDYVARAP
HHCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCHHCCCC
PGKEVEDLTAREIAKSLSNLIPASKMKEELLKVEKLQKEEVKEVAEKAEKVEAEEVVKKE
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EVAERGEEMESKAEGAEQPTATALEKAAAKEEVKQEVKTEEEKVKEYVMFIPDSVFEKAK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EITGTLRSVLYDSQWNIVAEVPAKDVVSAIEEKGAYAVLHDGVITQRMLDVMSLKGGRLI
HHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCEEH
LGRRVARVSKRPKGVFVVLLS
HHHHHHHHHCCCCCEEEEEEC
>Mature Secondary Structure
MVKYIIKALVEVDGPVDEHDIIGAIFGQTEGLLDDFDLRELQEKGRIGRILVKLQRRGNK
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCC
AVGEIYVPSNLDRVETALVAAMLESVDKVGPYPARISVVEIIDVRAEKIKKIIERAKEIL
CCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KKWSQEKSVDIREILKEISETTKKSQLIEYGPEKLPAGPGVERSDTIIIVEGRADVLNLL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEEEECCHHHHHHH
RYGYDNVIALGGATTKVPETIKKLAKEKIAIAFVDGDRGGLMVLKNLLSQADIDYVARAP
HHCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCHHCCCC
PGKEVEDLTAREIAKSLSNLIPASKMKEELLKVEKLQKEEVKEVAEKAEKVEAEEVVKKE
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EVAERGEEMESKAEGAEQPTATALEKAAAKEEVKQEVKTEEEKVKEYVMFIPDSVFEKAK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
EITGTLRSVLYDSQWNIVAEVPAKDVVSAIEEKGAYAVLHDGVITQRMLDVMSLKGGRLI
HHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCEEH
LGRRVARVSKRPKGVFVVLLS
HHHHHHHHHCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA