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The map label for this gene is 156936848

Identifier: 156936848

GI number: 156936848

Start: 50209

End: 51969

Strand: Reverse

Name: 156936848

Synonym: Igni_0053

Alternate gene names: NA

Gene position: 51969-50209 (Counterclockwise)

Preceding gene: 156936849

Following gene: 156936847

Centisome position: 4.01

GC content: 51.5

Gene sequence:

>1761_bases
ATGCTAAGGCCTTGGCAACAGTACTTCGTGAACCGTTCACTCGAAGAGCTGAAAGAGGGCAAGAAGGTCATTGCAATCAA
CTCCCCCACTGGAAGCGGTAAGACCCTAACTGCCCTCAAGATAATCGAAAGTGCTATAGAGCTCGGGATAGCTAAGAAGT
CCTTGTTCGCAGTGAGGACAGTAACCCAGCTCCTCCCCCCGCTCAGGGACGTAGAGAGGTTCGGGTTACGTCTGAAGGCC
GTCCCGCTGATAGGGAAGGAGAAGGCTTGTCCAGCCGGCTACGCCGGGGTGAACTTGTGCCCTCAGTGCTCTTGGAGGGA
CAGGGTAGGTGAGCCGCCCGCTTCGTGGACGGAGGTTTTCTCATGGATTGAGAGTACTATAAGGTCCTTCAAATGTCCCT
ACGTAACATTGAAGGAGCTCTCCAAGGACGCAGACTTAGTGGTGTTAAGTTACCAGTACCTCTCCCCGGACATCTTGCCT
AAACTAGGAACGGACCTCAAGGAGGCCCTAATAGTCGTCGACGAGGCGCATAACTTGCTGAAGTTTGTAAGGGAGAGGAA
GTTCAAGCTTGATAGAGCGATAGGCTTGCTGTCCTCCTACCCCAAACTCTTCAAGTCGCTAAACAGTACTGAGGGAGTGA
AGGAGGTTGTCGAGGTTATGAAGACTTTTTCCACAACTATACTCTCGTTGATCAACGTGCTCAGGAGGTTGAAAGGTTTC
AGTGTGGTGGAAAGGCCGCTGAGAGTAACTAACTTCTTCGAGGTGTCGACCTCAGAAATAAAGATAATAGTGGAAGCGCT
AGAGAGGGCATTACCCAAATTAGTCTTAGAAGCCCACCCAGCCGCGGACTTGGCCGTACAGATTAGGGACGTCTTGGAAG
CCTTCACGCTCTTAGAGAGCGGGCACGGGGCGGCTTACCTGGAGGGAGATTCCCTCGTTATCAGGGAACTTAAGCCTTGG
ATCTCCAAGTACGTCAATGAGAGCAAGGGGTTAATACTCCTCTCGGGAACCCTACACTCCAAACAGTTCCTCGAAACCGT
TCTGTCGGCTGAAGTGGTTTACTTAGACTTGTTCGATAATGAGTATTTGAGGAATTCTTACTTTAACTTGTTTAACCCAA
ACAACGTAATGTATTTGTTTATTACCGACTACAGCAGCAAGTACAAGCTTAGGAACGACCCCGTAATGATGGAGAGGCGT
AAGAGGATTGAACTAGCGTGCTACCGGATGGTCGCGAGGAGCGGAGGGACTTGCTTGATGGTTTACCCCTCTTACAGCGC
GCTCTCCTTAGCTAAACCCCACTTGTCAGAGCTCTCCGAGAGGGGCGAAGTCAACGTGATAGTGAGCGAGAGGGGGTTGG
GCCATAAGGTCTTAGAAGCGGCCAAGAGGGGCGCGTCACTCGTAGCCGCGGTCGCCGGGGATCAGTTGACTGAAGGAGTG
GAATTAGTTGACGAAGGGGGCTCTAGCATAATAAGGGCGGTCGCCGTATTGGGTGCTCCCTTCCCGTCGCCCAGCCCTTA
CCTTGAGGACTTCTCAAAGGCGGTCTCAAAGGGAGACTGGAAGAAGACGTTGGAAAAGCTCTACGAGGAGGAAATGTTAG
TCAAAGTAAAACAAGCCGTCGGGAGGTTGGTGAGGAGTCCCTCCGACAGCGGGGTCGTAATACTTGCAGACACGAGGTTC
TTGAACTATAAGGAAGTCCTAGCTAAGTGGTACCCCAAGCGCTTCTTGAGCTCAAGCGAGTTATTAGAAATGGTCTCTTG
A

Upstream 100 bases:

>100_bases
ACAAGTTCTTCTGGCTGGAGAGCGGTCACGACACCGAGAGCTTCGAAGAGCTCCTCTGGGAGTTATTAGGCCGCAGCTGA
GCCCCTCCGCGGATTTCCAG

Downstream 100 bases:

>100_bases
GGCCTTGAGGAGAGGGGATTGATGGAAAAACTGAGGGGTCGCACAGAAGGACTGCTCAAGCTCGCGGCTAGGCCCTTATC
CAAACTCTCGCCAAACGTAA

Product: DEAD_2 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 586; Mature: 586

Protein sequence:

>586_residues
MLRPWQQYFVNRSLEELKEGKKVIAINSPTGSGKTLTALKIIESAIELGIAKKSLFAVRTVTQLLPPLRDVERFGLRLKA
VPLIGKEKACPAGYAGVNLCPQCSWRDRVGEPPASWTEVFSWIESTIRSFKCPYVTLKELSKDADLVVLSYQYLSPDILP
KLGTDLKEALIVVDEAHNLLKFVRERKFKLDRAIGLLSSYPKLFKSLNSTEGVKEVVEVMKTFSTTILSLINVLRRLKGF
SVVERPLRVTNFFEVSTSEIKIIVEALERALPKLVLEAHPAADLAVQIRDVLEAFTLLESGHGAAYLEGDSLVIRELKPW
ISKYVNESKGLILLSGTLHSKQFLETVLSAEVVYLDLFDNEYLRNSYFNLFNPNNVMYLFITDYSSKYKLRNDPVMMERR
KRIELACYRMVARSGGTCLMVYPSYSALSLAKPHLSELSERGEVNVIVSERGLGHKVLEAAKRGASLVAAVAGDQLTEGV
ELVDEGGSSIIRAVAVLGAPFPSPSPYLEDFSKAVSKGDWKKTLEKLYEEEMLVKVKQAVGRLVRSPSDSGVVILADTRF
LNYKEVLAKWYPKRFLSSSELLEMVS

Sequences:

>Translated_586_residues
MLRPWQQYFVNRSLEELKEGKKVIAINSPTGSGKTLTALKIIESAIELGIAKKSLFAVRTVTQLLPPLRDVERFGLRLKA
VPLIGKEKACPAGYAGVNLCPQCSWRDRVGEPPASWTEVFSWIESTIRSFKCPYVTLKELSKDADLVVLSYQYLSPDILP
KLGTDLKEALIVVDEAHNLLKFVRERKFKLDRAIGLLSSYPKLFKSLNSTEGVKEVVEVMKTFSTTILSLINVLRRLKGF
SVVERPLRVTNFFEVSTSEIKIIVEALERALPKLVLEAHPAADLAVQIRDVLEAFTLLESGHGAAYLEGDSLVIRELKPW
ISKYVNESKGLILLSGTLHSKQFLETVLSAEVVYLDLFDNEYLRNSYFNLFNPNNVMYLFITDYSSKYKLRNDPVMMERR
KRIELACYRMVARSGGTCLMVYPSYSALSLAKPHLSELSERGEVNVIVSERGLGHKVLEAAKRGASLVAAVAGDQLTEGV
ELVDEGGSSIIRAVAVLGAPFPSPSPYLEDFSKAVSKGDWKKTLEKLYEEEMLVKVKQAVGRLVRSPSDSGVVILADTRF
LNYKEVLAKWYPKRFLSSSELLEMVS
>Mature_586_residues
MLRPWQQYFVNRSLEELKEGKKVIAINSPTGSGKTLTALKIIESAIELGIAKKSLFAVRTVTQLLPPLRDVERFGLRLKA
VPLIGKEKACPAGYAGVNLCPQCSWRDRVGEPPASWTEVFSWIESTIRSFKCPYVTLKELSKDADLVVLSYQYLSPDILP
KLGTDLKEALIVVDEAHNLLKFVRERKFKLDRAIGLLSSYPKLFKSLNSTEGVKEVVEVMKTFSTTILSLINVLRRLKGF
SVVERPLRVTNFFEVSTSEIKIIVEALERALPKLVLEAHPAADLAVQIRDVLEAFTLLESGHGAAYLEGDSLVIRELKPW
ISKYVNESKGLILLSGTLHSKQFLETVLSAEVVYLDLFDNEYLRNSYFNLFNPNNVMYLFITDYSSKYKLRNDPVMMERR
KRIELACYRMVARSGGTCLMVYPSYSALSLAKPHLSELSERGEVNVIVSERGLGHKVLEAAKRGASLVAAVAGDQLTEGV
ELVDEGGSSIIRAVAVLGAPFPSPSPYLEDFSKAVSKGDWKKTLEKLYEEEMLVKVKQAVGRLVRSPSDSGVVILADTRF
LNYKEVLAKWYPKRFLSSSELLEMVS

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555 [H]

Pfam domain/function: PF06733 DEAD_2 [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 65599; Mature: 65599

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS00690 DEAH_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPWQQYFVNRSLEELKEGKKVIAINSPTGSGKTLTALKIIESAIELGIAKKSLFAVRT
CCCHHHHHHHCCCHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VTQLLPPLRDVERFGLRLKAVPLIGKEKACPAGYAGVNLCPQCSWRDRVGEPPASWTEVF
HHHHCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHH
SWIESTIRSFKCPYVTLKELSKDADLVVLSYQYLSPDILPKLGTDLKEALIVVDEAHNLL
HHHHHHHHHCCCCCHHHHHCCCCCCEEEEEEHHCCCHHHHHHCCCHHHHHHHHHHHHHHH
KFVRERKFKLDRAIGLLSSYPKLFKSLNSTEGVKEVVEVMKTFSTTILSLINVLRRLKGF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SVVERPLRVTNFFEVSTSEIKIIVEALERALPKLVLEAHPAADLAVQIRDVLEAFTLLES
HHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
GHGAAYLEGDSLVIRELKPWISKYVNESKGLILLSGTLHSKQFLETVLSAEVVYLDLFDN
CCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCC
EYLRNSYFNLFNPNNVMYLFITDYSSKYKLRNDPVMMERRKRIELACYRMVARSGGTCLM
HHHHHCCCCCCCCCCEEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
VYPSYSALSLAKPHLSELSERGEVNVIVSERGLGHKVLEAAKRGASLVAAVAGDQLTEGV
EECCCCHHHHCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCHHEEHHHHCHHHHHHH
ELVDEGGSSIIRAVAVLGAPFPSPSPYLEDFSKAVSKGDWKKTLEKLYEEEMLVKVKQAV
HHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
GRLVRSPSDSGVVILADTRFLNYKEVLAKWYPKRFLSSSELLEMVS
HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MLRPWQQYFVNRSLEELKEGKKVIAINSPTGSGKTLTALKIIESAIELGIAKKSLFAVRT
CCCHHHHHHHCCCHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VTQLLPPLRDVERFGLRLKAVPLIGKEKACPAGYAGVNLCPQCSWRDRVGEPPASWTEVF
HHHHCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHH
SWIESTIRSFKCPYVTLKELSKDADLVVLSYQYLSPDILPKLGTDLKEALIVVDEAHNLL
HHHHHHHHHCCCCCHHHHHCCCCCCEEEEEEHHCCCHHHHHHCCCHHHHHHHHHHHHHHH
KFVRERKFKLDRAIGLLSSYPKLFKSLNSTEGVKEVVEVMKTFSTTILSLINVLRRLKGF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SVVERPLRVTNFFEVSTSEIKIIVEALERALPKLVLEAHPAADLAVQIRDVLEAFTLLES
HHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
GHGAAYLEGDSLVIRELKPWISKYVNESKGLILLSGTLHSKQFLETVLSAEVVYLDLFDN
CCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCC
EYLRNSYFNLFNPNNVMYLFITDYSSKYKLRNDPVMMERRKRIELACYRMVARSGGTCLM
HHHHHCCCCCCCCCCEEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
VYPSYSALSLAKPHLSELSERGEVNVIVSERGLGHKVLEAAKRGASLVAAVAGDQLTEGV
EECCCCHHHHCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCHHEEHHHHCHHHHHHH
ELVDEGGSSIIRAVAVLGAPFPSPSPYLEDFSKAVSKGDWKKTLEKLYEEEMLVKVKQAV
HHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
GRLVRSPSDSGVVILADTRFLNYKEVLAKWYPKRFLSSSELLEMVS
HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA