Click here to switch to the map view.

The map label for this gene is 156936817

Identifier: 156936817

GI number: 156936817

Start: 23149

End: 23751

Strand: Reverse

Name: 156936817

Synonym: Igni_0022

Alternate gene names: NA

Gene position: 23751-23149 (Counterclockwise)

Preceding gene: 156936822

Following gene: 156936814

Centisome position: 1.83

GC content: 51.08

Gene sequence:

>603_bases
TTGTTAAGCCGTTATCGACTGGGGGTCGGTAGCCGGAGAAGAATACTTCTACATCAAGTCGTTCAGTCGCCCAACGGCTC
TTCATCCCCAGAAGGGTTACACCCCACGGTTAAAGGCATGAGGTTGTTAAGGAGGCCCCTCTCGAAGAAGGAGAAAAAAC
TCCTCTTAAAGAAGGTGGAGGGCCTTCCTTGGGCTAGGTTCACCGTGGACCAAAAAGTAGAGGAAGTAAAAGTTCGTACT
GAGACCGAGAAGGAGTACGTGGTTTACTTCGTTGAAGGGAAGCCCACGTTCTGGGTTAAGGACGACAAGTACCTTCCGGT
CTTGTGCGGGAACGACGTTGAAGGGCCCTCAGTGGTGGTGGACAAGGGGGCGGTGCCCTACGTCACTAGGGGAGCGGACG
TCATGAGGCCCGGAATAATCTCCTTTGAAGGTGACTTCAAAAAGGGAGACGTGGTGTTGGTAAGGTCAGAGAACTTAAAG
TTTCCCATAGCCGTCGGGTTAGCCCTCTATGACAAGGAAGAGGCCGAAAAGATGGAAAGGGGTAAAGTAATTAAGAACTT
ACACTACTTGGGGGACGACTTGTTCAAGCTCTGCAAGTCTTGA

Upstream 100 bases:

>100_bases
CAAACACTCAACGCCTTTGGTGTGTGCGGCCTCCAACCCGAATCACACGGTGTACCCCATAAAGTTAAGGCTAAAAGTCG
GCGCGTCAAGGTTCGGGCCG

Downstream 100 bases:

>100_bases
GCTCTTCGAGCTGACGCAAGACGTAATCCCTAATCTCAGTTATCTTTGGTAGCTTCGTCACCACTTCGCCGCCCTCCATT
ACCTTGGTGAGGAGAGGGGT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLSRYRLGVGSRRRILLHQVVQSPNGSSSPEGLHPTVKGMRLLRRPLSKKEKKLLLKKVEGLPWARFTVDQKVEEVKVRT
ETEKEYVVYFVEGKPTFWVKDDKYLPVLCGNDVEGPSVVVDKGAVPYVTRGADVMRPGIISFEGDFKKGDVVLVRSENLK
FPIAVGLALYDKEEAEKMERGKVIKNLHYLGDDLFKLCKS

Sequences:

>Translated_200_residues
MLSRYRLGVGSRRRILLHQVVQSPNGSSSPEGLHPTVKGMRLLRRPLSKKEKKLLLKKVEGLPWARFTVDQKVEEVKVRT
ETEKEYVVYFVEGKPTFWVKDDKYLPVLCGNDVEGPSVVVDKGAVPYVTRGADVMRPGIISFEGDFKKGDVVLVRSENLK
FPIAVGLALYDKEEAEKMERGKVIKNLHYLGDDLFKLCKS
>Mature_200_residues
MLSRYRLGVGSRRRILLHQVVQSPNGSSSPEGLHPTVKGMRLLRRPLSKKEKKLLLKKVEGLPWARFTVDQKVEEVKVRT
ETEKEYVVYFVEGKPTFWVKDDKYLPVLCGNDVEGPSVVVDKGAVPYVTRGADVMRPGIISFEGDFKKGDVVLVRSENLK
FPIAVGLALYDKEEAEKMERGKVIKNLHYLGDDLFKLCKS

Specific function: Unknown

COG id: COG2016

COG function: function code J; Predicted RNA-binding protein (contains PUA domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6320844, Length=125, Percent_Identity=32, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022430
- InterPro:   IPR015266
- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR016437
- InterPro:   IPR004521 [H]

Pfam domain/function: PF01472 PUA [H]

EC number: NA

Molecular weight: Translated: 22675; Mature: 22675

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRYRLGVGSRRRILLHQVVQSPNGSSSPEGLHPTVKGMRLLRRPLSKKEKKLLLKKVE
CCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPWARFTVDQKVEEVKVRTETEKEYVVYFVEGKPTFWVKDDKYLPVLCGNDVEGPSVVV
CCCEEEEEHHHHHHHHHEECCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCEEEE
DKGAVPYVTRGADVMRPGIISFEGDFKKGDVVLVRSENLKFPIAVGLALYDKEEAEKMER
ECCCCCEEECCCHHHCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEECHHHHHHHHH
GKVIKNLHYLGDDLFKLCKS
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSRYRLGVGSRRRILLHQVVQSPNGSSSPEGLHPTVKGMRLLRRPLSKKEKKLLLKKVE
CCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GLPWARFTVDQKVEEVKVRTETEKEYVVYFVEGKPTFWVKDDKYLPVLCGNDVEGPSVVV
CCCEEEEEHHHHHHHHHEECCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCEEEE
DKGAVPYVTRGADVMRPGIISFEGDFKKGDVVLVRSENLKFPIAVGLALYDKEEAEKMER
ECCCCCEEECCCHHHCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEECHHHHHHHHH
GKVIKNLHYLGDDLFKLCKS
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]