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The map label for this gene is cph2 [H]

Identifier: 156936597

GI number: 156936597

Start: 40484

End: 42061

Strand: Direct

Name: cph2 [H]

Synonym: ESA_pESA3p05478

Alternate gene names: 156936597

Gene position: 40484-42061 (Clockwise)

Preceding gene: 156936595

Following gene: 156936599

Centisome position: 30.86

GC content: 57.79

Gene sequence:

>1578_bases
GTGACTCTCAGACAGTTTATTTCCTACCGACTTGGGTTGAGCACGTCGCTTGGCCGAAGTCTGGCTGTCTTACTTCTGTT
CCTCCTGGTGGGCGGGATCGGCACGAACGTACTGGTGTTTATGCACTCCTGGGATGATGAGATAGCACAGGCCGCCAATA
AGGCAGTCAACCTTTCTGTCGCCCAGGTGCGTCAGGCGGAAGATACCTTTATGGCAGTCGGCCAGACGCTTGATGACGTG
CGCGCGGCGGTCAGTGCCGGGCAGGCCGCAACGTACCATAGCTATCTGGTGCGCCTGAAAGCGCGTCAGCCGCTGCTCGA
CGGGCTCTATTTCTACAACGCGCAGGGCGTTATCAAAGGTTCTTCATCCGGCATCAGCGGCATTCCGGGCGATATCACGC
ATCAGGACTATTTCCAGTTTCATTATGAGAACCGCCAGACCGGCATTCATATCGGGCGCGTGATTAAAAGCCTGGCGTCC
GGTGAGCTTGTGATCCCGGTATCGGTGAGAGTTAACGATCTCAGCGGTGGCTTCGCGGGCGTGGTGCTCGCTACCGTTAA
GCTTGACTATTTCCGCCGCTTTTACAGCTATTTCGAGCTCGGCCCGCGCGACATGCTGGCACTGCTGCTGACTGACGGTT
CGGTGCTCTGTGTGCGACCCTACGATGAAGCGAAAATTGACATGAATATTGCCGGCAGTCCGCTGTTTACCCGCGAGCTG
ATTCGCGCCGACCGCGGCACCGGCACCTGGGTGGCGTCGCTCGATCATATTGAAAGGGTATTCGGCTTTGCCCGTACGGA
AAAACTGCCGCTGGTGGTGGTCGCCGGTTACGATCGCGCCGAAGTGCGTATGCACTGGCTGCGTAATAATCTGCCGGGTC
TGCTCTCCAACTTTATGCTGCTGCTCGGGTTTCTGCTGTTCAGTTCTGTGGTGTTTCGCAAAGTGCGGGGCAGCATTCGC
GATCAGCAGGAGCTCAAACAACTGCGCGACGAGCTTCTCAAAGCAAACCAGACGTTTAAATCGATGGCGATGGCCGACAG
CCTGACGGGGCTTGCCAACCGCCGCAAGTTTGATACCACCCTCGCGAAAGTGCTGGCGGACGCCGCGGCTACAGGAAGCC
CTGTGTCGCTGATTATGCTCGATATCGATTTCTTCAAGCGCTACAACGACAGCCGCGGCCATGCCGCCGGGGACGCCTGT
CTGCGGCTTATCAGCAATACGTTGCAGATGGTGACGCTGCGCACCAGCGATCTGGTGGCGCGTTACGGTGGAGAAGAGTT
CGCGATCGTGCTGCCGGATACCACCGGCGAAGAAGCGCTGGCGCTCGCGCAGCGGGCTGTCTGTATGGTCAGGGAAAAAC
ATCTGCCGCATCCGTCGACGGATCTGCCGGAGCAGATCGTCACCATCAGCGCCGGTTGCCATACGGTGCGGGGCAACGGG
CGCGAGGACGCATTCAGCGTACTCATTCGTGGTGCCGATACTGCGCTTTATCTTGCGAAAAACCACGGGCGTAATCAGGC
ATACCGGTTCTCAAATACCATTGCGACCGGCAATGATAAATCCATTTATGCGGCTTAG

Upstream 100 bases:

>100_bases
GTTAAATTATTGTCACCAGACGGGCGTAAGCCCCTCCAGAAACGGCCGCCGATACCGATAACCCCTGAAGCCATGTTGGT
GATTTCCGGGGAACCGTTTC

Downstream 100 bases:

>100_bases
GGCGCGTGGAGCAGGGCAAGGCGTGCGTGGGTAAACGACGGGGATTCACCGTCAGGCGCGTTCCCCTGACGGTGTGGGGG
CTTTAATGCTTACTGACACG

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MTLRQFISYRLGLSTSLGRSLAVLLLFLLVGGIGTNVLVFMHSWDDEIAQAANKAVNLSVAQVRQAEDTFMAVGQTLDDV
RAAVSAGQAATYHSYLVRLKARQPLLDGLYFYNAQGVIKGSSSGISGIPGDITHQDYFQFHYENRQTGIHIGRVIKSLAS
GELVIPVSVRVNDLSGGFAGVVLATVKLDYFRRFYSYFELGPRDMLALLLTDGSVLCVRPYDEAKIDMNIAGSPLFTREL
IRADRGTGTWVASLDHIERVFGFARTEKLPLVVVAGYDRAEVRMHWLRNNLPGLLSNFMLLLGFLLFSSVVFRKVRGSIR
DQQELKQLRDELLKANQTFKSMAMADSLTGLANRRKFDTTLAKVLADAAATGSPVSLIMLDIDFFKRYNDSRGHAAGDAC
LRLISNTLQMVTLRTSDLVARYGGEEFAIVLPDTTGEEALALAQRAVCMVREKHLPHPSTDLPEQIVTISAGCHTVRGNG
REDAFSVLIRGADTALYLAKNHGRNQAYRFSNTIATGNDKSIYAA

Sequences:

>Translated_525_residues
MTLRQFISYRLGLSTSLGRSLAVLLLFLLVGGIGTNVLVFMHSWDDEIAQAANKAVNLSVAQVRQAEDTFMAVGQTLDDV
RAAVSAGQAATYHSYLVRLKARQPLLDGLYFYNAQGVIKGSSSGISGIPGDITHQDYFQFHYENRQTGIHIGRVIKSLAS
GELVIPVSVRVNDLSGGFAGVVLATVKLDYFRRFYSYFELGPRDMLALLLTDGSVLCVRPYDEAKIDMNIAGSPLFTREL
IRADRGTGTWVASLDHIERVFGFARTEKLPLVVVAGYDRAEVRMHWLRNNLPGLLSNFMLLLGFLLFSSVVFRKVRGSIR
DQQELKQLRDELLKANQTFKSMAMADSLTGLANRRKFDTTLAKVLADAAATGSPVSLIMLDIDFFKRYNDSRGHAAGDAC
LRLISNTLQMVTLRTSDLVARYGGEEFAIVLPDTTGEEALALAQRAVCMVREKHLPHPSTDLPEQIVTISAGCHTVRGNG
REDAFSVLIRGADTALYLAKNHGRNQAYRFSNTIATGNDKSIYAA
>Mature_524_residues
TLRQFISYRLGLSTSLGRSLAVLLLFLLVGGIGTNVLVFMHSWDDEIAQAANKAVNLSVAQVRQAEDTFMAVGQTLDDVR
AAVSAGQAATYHSYLVRLKARQPLLDGLYFYNAQGVIKGSSSGISGIPGDITHQDYFQFHYENRQTGIHIGRVIKSLASG
ELVIPVSVRVNDLSGGFAGVVLATVKLDYFRRFYSYFELGPRDMLALLLTDGSVLCVRPYDEAKIDMNIAGSPLFTRELI
RADRGTGTWVASLDHIERVFGFARTEKLPLVVVAGYDRAEVRMHWLRNNLPGLLSNFMLLLGFLLFSSVVFRKVRGSIRD
QQELKQLRDELLKANQTFKSMAMADSLTGLANRRKFDTTLAKVLADAAATGSPVSLIMLDIDFFKRYNDSRGHAAGDACL
RLISNTLQMVTLRTSDLVARYGGEEFAIVLPDTTGEEALALAQRAVCMVREKHLPHPSTDLPEQIVTISAGCHTVRGNGR
EDAFSVLIRGADTALYLAKNHGRNQAYRFSNTIATGNDKSIYAA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=38.5093167701863, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=36.9047619047619, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=31.6666666666667, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1788381, Length=162, Percent_Identity=38.8888888888889, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081881, Length=188, Percent_Identity=35.6382978723404, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI87081974, Length=164, Percent_Identity=30.4878048780488, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=35.8024691358025, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=35.7541899441341, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787541, Length=181, Percent_Identity=32.0441988950276, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787802, Length=139, Percent_Identity=34.5323741007194, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788085, Length=171, Percent_Identity=32.7485380116959, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 57784; Mature: 57653

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRQFISYRLGLSTSLGRSLAVLLLFLLVGGIGTNVLVFMHSWDDEIAQAANKAVNLSV
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCHH
AQVRQAEDTFMAVGQTLDDVRAAVSAGQAATYHSYLVRLKARQPLLDGLYFYNAQGVIKG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHEEECCCEEEEC
SSSGISGIPGDITHQDYFQFHYENRQTGIHIGRVIKSLASGELVIPVSVRVNDLSGGFAG
CCCCCCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHH
VVLATVKLDYFRRFYSYFELGPRDMLALLLTDGSVLCVRPYDEAKIDMNIAGSPLFTREL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCEEEECCCCCCEEEEEECCCCHHHHHH
IRADRGTGTWVASLDHIERVFGFARTEKLPLVVVAGYDRAEVRMHWLRNNLPGLLSNFML
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHH
LLGFLLFSSVVFRKVRGSIRDQQELKQLRDELLKANQTFKSMAMADSLTGLANRRKFDTT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LAKVLADAAATGSPVSLIMLDIDFFKRYNDSRGHAAGDACLRLISNTLQMVTLRTSDLVA
HHHHHHHHCCCCCCEEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEHHHHHH
RYGGEEFAIVLPDTTGEEALALAQRAVCMVREKHLPHPSTDLPEQIVTISAGCHTVRGNG
HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCEEECCCC
REDAFSVLIRGADTALYLAKNHGRNQAYRFSNTIATGNDKSIYAA
CHHHHHHHEECCCEEEEEEECCCCCCEEEEECCEECCCCCCEEEC
>Mature Secondary Structure 
TLRQFISYRLGLSTSLGRSLAVLLLFLLVGGIGTNVLVFMHSWDDEIAQAANKAVNLSV
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCHH
AQVRQAEDTFMAVGQTLDDVRAAVSAGQAATYHSYLVRLKARQPLLDGLYFYNAQGVIKG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHEEECCCEEEEC
SSSGISGIPGDITHQDYFQFHYENRQTGIHIGRVIKSLASGELVIPVSVRVNDLSGGFAG
CCCCCCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHH
VVLATVKLDYFRRFYSYFELGPRDMLALLLTDGSVLCVRPYDEAKIDMNIAGSPLFTREL
HHHHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCEEEECCCCCCEEEEEECCCCHHHHHH
IRADRGTGTWVASLDHIERVFGFARTEKLPLVVVAGYDRAEVRMHWLRNNLPGLLSNFML
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHHH
LLGFLLFSSVVFRKVRGSIRDQQELKQLRDELLKANQTFKSMAMADSLTGLANRRKFDTT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LAKVLADAAATGSPVSLIMLDIDFFKRYNDSRGHAAGDACLRLISNTLQMVTLRTSDLVA
HHHHHHHHCCCCCCEEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEHHHHHH
RYGGEEFAIVLPDTTGEEALALAQRAVCMVREKHLPHPSTDLPEQIVTISAGCHTVRGNG
HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCEEECCCC
REDAFSVLIRGADTALYLAKNHGRNQAYRFSNTIATGNDKSIYAA
CHHHHHHHEECCCEEEEEEECCCCCCEEEEECCEECCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]