Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 15678288

GI number: 15678288

Start: 201271

End: 201651

Strand: Direct

Name: Not Available

Synonym: MTH260

Alternate gene names: 15678288

Gene position: 201271-201651 (Clockwise)

Preceding gene: 15678287

Following gene: 15678289

Centisome position: 11.49

GC content: 49.08

Gene sequence:

>381_bases
TTGGCATTTAAGGTTGTGATTTCAGACAAGGAGAAGAGCGTCCAGATGGAGGTCGACCCATCAGAGTCCAGGGGCCTCAT
TGGCCTCACCATAGGCGACGAATTCGATGGATCAATAATAGGCCTCAGCGGATACAAACTGAAGATCACAGGTGGAAGCG
ATAAGAACGGTTTCCCGATGAAGAAGACAGTGCCAGGTGCAAGGAGGATAAGGAGCCTTGTATCAGGCGGTGTGGGCTAT
AAACCCAGACGCGATGGCGAGAGAAGAAGAAAAACCTTCAGGGGAAACACAATATCTGATGACATAGTCCAGATAAACAC
CGTTGTCATTGAGAAGGGTGAGAAACCACTCGAAGAACTCCTTGGCGCCGATGAGGAATAA

Upstream 100 bases:

>100_bases
GAGGAACTTGATCTCATGGATAAGATAGCTGAAATCAAGAGGAAGAAGAATCCTGACTGGGGAATGAAGGCACCATTTTA
AAATATAAGGAGGAGATATA

Downstream 100 bases:

>100_bases
TAAAAGCGTTTATAGGTGTAATCTGTGAAAAATCAATCCGAAATAAACATTGGTCTTGTGGGGCACGTGGACCATGGTAA
AACAACCCTTACAAAGGCAC

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MAFKVVISDKEKSVQMEVDPSESRGLIGLTIGDEFDGSIIGLSGYKLKITGGSDKNGFPMKKTVPGARRIRSLVSGGVGY
KPRRDGERRRKTFRGNTISDDIVQINTVVIEKGEKPLEELLGADEE

Sequences:

>Translated_126_residues
MAFKVVISDKEKSVQMEVDPSESRGLIGLTIGDEFDGSIIGLSGYKLKITGGSDKNGFPMKKTVPGARRIRSLVSGGVGY
KPRRDGERRRKTFRGNTISDDIVQINTVVIEKGEKPLEELLGADEE
>Mature_125_residues
AFKVVISDKEKSVQMEVDPSESRGLIGLTIGDEFDGSIIGLSGYKLKITGGSDKNGFPMKKTVPGARRIRSLVSGGVGYK
PRRDGERRRKTFRGNTISDDIVQINTVVIEKGEKPLEELLGADEE

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family

Homologues:

Organism=Homo sapiens, GI17158044, Length=87, Percent_Identity=42.5287356321839, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508687, Length=113, Percent_Identity=32.7433628318584, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6325167, Length=105, Percent_Identity=43.8095238095238, Blast_Score=82, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6319658, Length=105, Percent_Identity=43.8095238095238, Blast_Score=82, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17737290, Length=101, Percent_Identity=40.5940594059406, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24640437, Length=88, Percent_Identity=43.1818181818182, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6E_METTH (O26360)

Other databases:

- EMBL:   AE000666
- PIR:   G69132
- RefSeq:   NP_275403.1
- STRING:   O26360
- GeneID:   1470221
- GenomeReviews:   AE000666_GR
- KEGG:   mth:MTH260
- NMPDR:   fig|187420.1.peg.258
- eggNOG:   arNOG11366
- HOGENOM:   HBG497422
- OMA:   DGFPMRP
- ProtClustDB:   PRK04290
- BioCyc:   MTHE187420:MTH260-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00512
- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282
- PANTHER:   PTHR11502
- PANTHER:   PTHR11502:SF2

Pfam domain/function: PF01092 Ribosomal_S6e

EC number: NA

Molecular weight: Translated: 13769; Mature: 13638

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKVVISDKEKSVQMEVDPSESRGLIGLTIGDEFDGSIIGLSGYKLKITGGSDKNGFPM
CEEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEECCCCEEEEECCCCCCCCCC
KKTVPGARRIRSLVSGGVGYKPRRDGERRRKTFRGNTISDDIVQINTVVIEKGEKPLEEL
CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCCHHHHH
LGADEE
CCCCCC
>Mature Secondary Structure 
AFKVVISDKEKSVQMEVDPSESRGLIGLTIGDEFDGSIIGLSGYKLKITGGSDKNGFPM
EEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCCEEECCCCEEEEECCCCCCCCCC
KKTVPGARRIRSLVSGGVGYKPRRDGERRRKTFRGNTISDDIVQINTVVIEKGEKPLEEL
CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCCHHHHH
LGADEE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463