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Identifier: 15678068

GI number: 15678068

Start: 19839

End: 20204

Strand: Direct

Name: Not Available

Synonym: MTH38

Alternate gene names: 15678068

Gene position: 19839-20204 (Clockwise)

Preceding gene: 15678067

Following gene: 15678069

Centisome position: 1.13

GC content: 46.72

Gene sequence:

>366_bases
ATGGTAAGGAAGATTACCAAGACGAATCCCAATCTTATAAAACTCATACGTAATCTCAGGAAAAAATCATCCCAGGAAGG
CGCAGCAATCTGGAAGGACGTTGCAAGGAGACTCGAAAGGCCCACAAGGAACAGGGCTGCAGTCAATATATCCAAGATAA
ACAGGCACTCCGATGAGGATGAAACAGTTCTCGTGCCTGGAAAGGTCCTTGGAAGCGGAAACCTTGACCACAGGGTCCAG
GTTGTTGCCCTGTCATTTTCACAGACAGCAAGGGATAAGATCGAGAGGGCCGGGGGAGAGTGCCTGACACTCGGAAAAAT
TGTTGAAGAGAACCCGGCCATTAAGAACATAAAGATAATAGAATAA

Upstream 100 bases:

>100_bases
CGACGGATCAGTTGACCCAAAGGATGTTCTCCTTAAGGCCTGTGACATCCTCAGGGACAAGGCAGAGCAGGTAATAACAT
TTTGTGAAGGAGGCTAACCA

Downstream 100 bases:

>100_bases
GGTGTTGCTCATGATCATCAACGGAGAAGGACATATCCTTGGAAGACTGGCAAGTGTCGTCAGCAAGAAGCTCCTTGAGG
GGGAGGAAGTGATCGTCTTA

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MVRKITKTNPNLIKLIRNLRKKSSQEGAAIWKDVARRLERPTRNRAAVNISKINRHSDEDETVLVPGKVLGSGNLDHRVQ
VVALSFSQTARDKIERAGGECLTLGKIVEENPAIKNIKIIE

Sequences:

>Translated_121_residues
MVRKITKTNPNLIKLIRNLRKKSSQEGAAIWKDVARRLERPTRNRAAVNISKINRHSDEDETVLVPGKVLGSGNLDHRVQ
VVALSFSQTARDKIERAGGECLTLGKIVEENPAIKNIKIIE
>Mature_121_residues
MVRKITKTNPNLIKLIRNLRKKSSQEGAAIWKDVARRLERPTRNRAAVNISKINRHSDEDETVLVPGKVLGSGNLDHRVQ
VVALSFSQTARDKIERAGGECLTLGKIVEENPAIKNIKIIE

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18E_METTH (O26145)

Other databases:

- EMBL:   AE000666
- PIR:   B69149
- RefSeq:   NP_275182.1
- ProteinModelPortal:   O26145
- SMR:   O26145
- STRING:   O26145
- GeneID:   1470000
- GenomeReviews:   AE000666_GR
- KEGG:   mth:MTH38
- NMPDR:   fig|187420.1.peg.37
- eggNOG:   arNOG11376
- HOGENOM:   HBG392438
- OMA:   SKINRYT
- ProtClustDB:   PRK04005
- BioCyc:   MTHE187420:MTH38-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00329
- InterPro:   IPR001196
- InterPro:   IPR021131
- InterPro:   IPR022947

Pfam domain/function: PF00828 Ribosomal_L18e; SSF52080 Ribosomal_L18e/L15

EC number: NA

Molecular weight: Translated: 13546; Mature: 13546

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: PS01106 RIBOSOMAL_L18E; PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKITKTNPNLIKLIRNLRKKSSQEGAAIWKDVARRLERPTRNRAAVNISKINRHSDED
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCCCCC
ETVLVPGKVLGSGNLDHRVQVVALSFSQTARDKIERAGGECLTLGKIVEENPAIKNIKII
CEEEECCEEECCCCCCCEEEEEEEECCHHHHHHHHHCCCCEEEHHHHHHCCCCCCCEEEE
E
C
>Mature Secondary Structure
MVRKITKTNPNLIKLIRNLRKKSSQEGAAIWKDVARRLERPTRNRAAVNISKINRHSDED
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCCCCC
ETVLVPGKVLGSGNLDHRVQVVALSFSQTARDKIERAGGECLTLGKIVEENPAIKNIKII
CEEEECCEEECCCCCCCEEEEEEEECCHHHHHHHHHCCCCEEEHHHHHHCCCCCCCEEEE
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463