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The map label for this gene is gntR

Identifier: 15674168

GI number: 15674168

Start: 2271521

End: 2272369

Strand: Direct

Name: gntR

Synonym: L54944

Alternate gene names: 15674168

Gene position: 2271521-2272369 (Clockwise)

Preceding gene: 15674164

Following gene: 15674169

Centisome position: 96.02

GC content: 36.63

Gene sequence:

>849_bases
ATGTCGCGTACTTTAATCAGCCGAATCCGAAGTTATTATGATAACCTCAGTAAATCAGATCAGGCAATTTCTGACTATTT
AATTGCGAATATTGATAGTGCAGCGAGGCTTTCAATTCAGGAATTTGCTCAAAAAACTCATGTCTCTACGGCTACAATTT
CCAGATTTTCTAAAAAAATTGGCTTTAATTCCTTCCAAGAATTAAAACTCGCCATTCATGCCACTGACTCGACACGAAAC
GATGAATTTTTTAGCGAACTTTCACCAACTGACGATTACAAAGAAATACTGACAAAAAACTTCAACGGCAATATTTCATC
ATTAAATTCTACATTAAACCTTATCACTAACAGACAACTTGACCAAACCATGGAAATTTTGCTCAATGCCAGCACTTGCG
GTTTTTTTGGTTTGGGTGGTTCAAACGCTGTTGCATTGATTGCTTTTCATAAATTTTTGAGAATGCCTTTGCACTGCGTT
TATCATCAGGATTTTCATTTTCAACAAATGCAAGCTGCAAAATTAACGAGCGACGATTGTGCTTTTGTTATTTCACATAC
AGGAAAAAACAGAGATACAATGCACTTGGTTGAAATTTTGAAGAGTCGCGGGGTTCCAATTATTGCATTGACTTCTTTTG
CGAGTTCACCTTTAGCTAAATCGGCCGATGTTGCGCTAATTTCAATTTCTGAAGAAATTTCATTTCGACCTGAAGCTGTC
GCTTCCACTGTTTCTCAAATTAGTTTGCTTGATGCCTTGTTTATGATGTACGGAATGAAAATGAAAAATGTTTCTGAAGG
GACTTTATCTGAAATCCGAAAAGTCATTCGAGATTCCCGTATTTCCTAG

Upstream 100 bases:

>100_bases
TACGCATCGTTCGGTCCCAATAAAATGATAGTCAGTACATGAAACATTGTTTCGTGTTACTGGCTATGATATAATGTAGT
CAATTAGAAGGAGGCTTGAT

Downstream 100 bases:

>100_bases
AATTTATCCATTTATCTTATAGAAAGGATGTGATTTTATGGCATTTTCTAACACTAGACGACGCTACGCAAGTTTTGATA
CCGTTGCGTCAATTCCTGGA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSRTLISRIRSYYDNLSKSDQAISDYLIANIDSAARLSIQEFAQKTHVSTATISRFSKKIGFNSFQELKLAIHATDSTRN
DEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLITNRQLDQTMEILLNASTCGFFGLGGSNAVALIAFHKFLRMPLHCV
YHQDFHFQQMQAAKLTSDDCAFVISHTGKNRDTMHLVEILKSRGVPIIALTSFASSPLAKSADVALISISEEISFRPEAV
ASTVSQISLLDALFMMYGMKMKNVSEGTLSEIRKVIRDSRIS

Sequences:

>Translated_282_residues
MSRTLISRIRSYYDNLSKSDQAISDYLIANIDSAARLSIQEFAQKTHVSTATISRFSKKIGFNSFQELKLAIHATDSTRN
DEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLITNRQLDQTMEILLNASTCGFFGLGGSNAVALIAFHKFLRMPLHCV
YHQDFHFQQMQAAKLTSDDCAFVISHTGKNRDTMHLVEILKSRGVPIIALTSFASSPLAKSADVALISISEEISFRPEAV
ASTVSQISLLDALFMMYGMKMKNVSEGTLSEIRKVIRDSRIS
>Mature_281_residues
SRTLISRIRSYYDNLSKSDQAISDYLIANIDSAARLSIQEFAQKTHVSTATISRFSKKIGFNSFQELKLAIHATDSTRND
EFFSELSPTDDYKEILTKNFNGNISSLNSTLNLITNRQLDQTMEILLNASTCGFFGLGGSNAVALIAFHKFLRMPLHCVY
HQDFHFQQMQAAKLTSDDCAFVISHTGKNRDTMHLVEILKSRGVPIIALTSFASSPLAKSADVALISISEEISFRPEAVA
STVSQISLLDALFMMYGMKMKNVSEGTLSEIRKVIRDSRIS

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=251, Percent_Identity=27.0916334661355, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788159, Length=280, Percent_Identity=26.4285714285714, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082130, Length=252, Percent_Identity=25.7936507936508, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788767, Length=257, Percent_Identity=25.2918287937743, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31414; Mature: 31283

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTLISRIRSYYDNLSKSDQAISDYLIANIDSAARLSIQEFAQKTHVSTATISRFSKKI
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GFNSFQELKLAIHATDSTRNDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLITNRQL
CCCHHHHEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
DQTMEILLNASTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSDDC
HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
AFVISHTGKNRDTMHLVEILKSRGVPIIALTSFASSPLAKSADVALISISEEISFRPEAV
EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEECHHHCCCHHHH
ASTVSQISLLDALFMMYGMKMKNVSEGTLSEIRKVIRDSRIS
HHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRTLISRIRSYYDNLSKSDQAISDYLIANIDSAARLSIQEFAQKTHVSTATISRFSKKI
CHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GFNSFQELKLAIHATDSTRNDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLITNRQL
CCCHHHHEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
DQTMEILLNASTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSDDC
HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
AFVISHTGKNRDTMHLVEILKSRGVPIIALTSFASSPLAKSADVALISISEEISFRPEAV
EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEECHHHCCCHHHH
ASTVSQISLLDALFMMYGMKMKNVSEGTLSEIRKVIRDSRIS
HHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]