Click here to switch to the map view.

The map label for this gene is yvjB

Identifier: 15674110

GI number: 15674110

Start: 2198049

End: 2199335

Strand: Reverse

Name: yvjB

Synonym: L181494

Alternate gene names: 15674110

Gene position: 2199335-2198049 (Counterclockwise)

Preceding gene: 15674111

Following gene: 15674109

Centisome position: 92.97

GC content: 37.68

Gene sequence:

>1287_bases
TTGATAGAAACACTGATTACTTTTATTATTATCTTTGGTATTATTGTCGCTATCCATGAATATGGCCATCTTTGGTGGGC
AAAACGTTCAGGAATTTTAGTGCGTGAATATGCCGTTGGAATGGGCCCGAAAATTTTTGCTCACCAAGCAAAAGATGGGA
CACTTTACACGATAAGAATTCTTCCACTCGGTGGCTATGTTCGTTTGGCTGGTTGGGGTGATGACAAGACTGAAATCAAA
AAAGGACAAGCTGCAAGTCTTGTTGTCAGTAAATCTGAAGTAGTAAATCCAGAAGCTGAAAATTCTGTCAGTAATATCGT
CAGAAGAATTAATCTGTCAGAACATGTTGAATTAGAAGAAGCAATTCCCATGTTGATTACTGAATATGATTTTGAAAAAG
AACTTTTCATTGAAGGAGAAGTTTTTGGGGAAATCAAACGTTATTCTGTTGATCATGATGCAACAATCATTGAAGAAGAT
GGAACAGAAGTTCGGATTGCACCACTCGATGTTCAATATCAATCAGCCGGTGTCTTTCATAAAATGTTGACAAACTTCGG
TGGTCCTTTGAATAACTTTATTTTAGGAATCATTGCTTTTATCGTTCTAACCTTTGTTCAAGGAGGCGTTCCTTCAACTA
CTAATGCTATTGGCCAAGTTGAAAAAGGAACACCCGCTTACAATGCAGGCTTAAAAGCTGGTGATAAAATTGAAGCAGTC
AATGGAACTAAAACGGCAGATTGGAACAATGTTGTTACTGAAATTTCAGGTTCTAAAGGAAAAGAATTAAAACTTGAAGT
TAGCCGTTCAGGCAAATCGGAAACCTTATCAGTTACACCTAAAAAAATGGACGGAAGTTACCGTGTTGGCATTATGCAAT
CAATGAAAACAGGTTTCTTTGATAAGATTACAGGTGGCTTTGTTCAAGCAGGCCAATCAGCTACAGCAATCTTTAAAGCT
TTAGGAAGTTTGATTGCACGACCGAGTCTTGATAAACTTGGTGGCCCAGTTGCTATTTATCAACTCAGTGGTCAAGCCGC
GAGAGCAGGTTTTCCAGCTATTGTCTATCTTTTAGCTATGCTTTCAATTAATTTAGGGATTGTCAATCTTTTTCCTATTC
CAGTACTTGATGGTGGAAAAATTGTCCTAAATATTATTGAAGCAATTCGTGGCAAAGCACTCTCACAAGAAAAGGAATCA
ATCATCACAATGGTAGGAGTTGTCTTCATGCTTGTGCTCTTTGTAGCAGTAACATGGAATGATATTCTCCGAGCCTTTGT
AAATTAA

Upstream 100 bases:

>100_bases
ACCAGGTCATGGTGGAATTCTTGACCGCTTTGACAATTTAATTTTTGTTTTCCCGATTATGCATCTACTTGGACTATTCT
AATTTTAAGGAGGAAGTCGA

Downstream 100 bases:

>100_bases
TATATCTATTCGTCTTCTATTTCAAAAGGAAAGAAGCTGAACCAAACTCATAAAGGAAATTTTAAAATTATGAAACAATC
AAAAATGCTTATACCAACCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MIETLITFIIIFGIIVAIHEYGHLWWAKRSGILVREYAVGMGPKIFAHQAKDGTLYTIRILPLGGYVRLAGWGDDKTEIK
KGQAASLVVSKSEVVNPEAENSVSNIVRRINLSEHVELEEAIPMLITEYDFEKELFIEGEVFGEIKRYSVDHDATIIEED
GTEVRIAPLDVQYQSAGVFHKMLTNFGGPLNNFILGIIAFIVLTFVQGGVPSTTNAIGQVEKGTPAYNAGLKAGDKIEAV
NGTKTADWNNVVTEISGSKGKELKLEVSRSGKSETLSVTPKKMDGSYRVGIMQSMKTGFFDKITGGFVQAGQSATAIFKA
LGSLIARPSLDKLGGPVAIYQLSGQAARAGFPAIVYLLAMLSINLGIVNLFPIPVLDGGKIVLNIIEAIRGKALSQEKES
IITMVGVVFMLVLFVAVTWNDILRAFVN

Sequences:

>Translated_428_residues
MIETLITFIIIFGIIVAIHEYGHLWWAKRSGILVREYAVGMGPKIFAHQAKDGTLYTIRILPLGGYVRLAGWGDDKTEIK
KGQAASLVVSKSEVVNPEAENSVSNIVRRINLSEHVELEEAIPMLITEYDFEKELFIEGEVFGEIKRYSVDHDATIIEED
GTEVRIAPLDVQYQSAGVFHKMLTNFGGPLNNFILGIIAFIVLTFVQGGVPSTTNAIGQVEKGTPAYNAGLKAGDKIEAV
NGTKTADWNNVVTEISGSKGKELKLEVSRSGKSETLSVTPKKMDGSYRVGIMQSMKTGFFDKITGGFVQAGQSATAIFKA
LGSLIARPSLDKLGGPVAIYQLSGQAARAGFPAIVYLLAMLSINLGIVNLFPIPVLDGGKIVLNIIEAIRGKALSQEKES
IITMVGVVFMLVLFVAVTWNDILRAFVN
>Mature_428_residues
MIETLITFIIIFGIIVAIHEYGHLWWAKRSGILVREYAVGMGPKIFAHQAKDGTLYTIRILPLGGYVRLAGWGDDKTEIK
KGQAASLVVSKSEVVNPEAENSVSNIVRRINLSEHVELEEAIPMLITEYDFEKELFIEGEVFGEIKRYSVDHDATIIEED
GTEVRIAPLDVQYQSAGVFHKMLTNFGGPLNNFILGIIAFIVLTFVQGGVPSTTNAIGQVEKGTPAYNAGLKAGDKIEAV
NGTKTADWNNVVTEISGSKGKELKLEVSRSGKSETLSVTPKKMDGSYRVGIMQSMKTGFFDKITGGFVQAGQSATAIFKA
LGSLIARPSLDKLGGPVAIYQLSGQAARAGFPAIVYLLAMLSINLGIVNLFPIPVLDGGKIVLNIIEAIRGKALSQEKES
IITMVGVVFMLVLFVAVTWNDILRAFVN

Specific function: Unknown

COG id: COG0750

COG function: function code M; Predicted membrane-associated Zn-dependent proteases 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain

Homologues:

Organism=Escherichia coli, GI1786373, Length=230, Percent_Identity=30.4347826086957, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2128_LACLA (Q9CDT3)

Other databases:

- EMBL:   AE005176
- PIR:   H86890
- RefSeq:   NP_268285.1
- ProteinModelPortal:   Q9CDT3
- MEROPS:   M50.004
- GeneID:   1115805
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L181494
- NMPDR:   fig|272623.1.peg.2183
- HOGENOM:   HBG664087
- OMA:   HGTEFVV
- ProtClustDB:   CLSK2458885
- BioCyc:   LLAC272623:L181494-MONOMER
- GO:   GO:0006508
- InterPro:   IPR001478
- InterPro:   IPR004387
- InterPro:   IPR008915
- SMART:   SM00228
- TIGRFAMs:   TIGR00054

Pfam domain/function: PF00595 PDZ; PF02163 Peptidase_M50; SSF50156 PDZ

EC number: NA

Molecular weight: Translated: 46424; Mature: 46424

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50106 PDZ; PS00142 ZINC_PROTEASE

Important sites: ACT_SITE 20-20

Signals:

None

Transmembrane regions:

HASH(0xff12174)-; HASH(0x102e0a1c)-; HASH(0xfe32ffc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETLITFIIIFGIIVAIHEYGHLWWAKRSGILVREYAVGMGPKIFAHQAKDGTLYTIRI
CHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEHHCCCCCHHEEEECCCCEEEEEEE
LPLGGYVRLAGWGDDKTEIKKGQAASLVVSKSEVVNPEAENSVSNIVRRINLSEHVELEE
EECCCEEEEEECCCCHHHHCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHCCCHHCCCHHH
AIPMLITEYDFEKELFIEGEVFGEIKRYSVDHDATIIEEDGTEVRIAPLDVQYQSAGVFH
HHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEECCCCEEEEEEEEEEECCCHHHH
KMLTNFGGPLNNFILGIIAFIVLTFVQGGVPSTTNAIGQVEKGTPAYNAGLKAGDKIEAV
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEC
NGTKTADWNNVVTEISGSKGKELKLEVSRSGKSETLSVTPKKMDGSYRVGIMQSMKTGFF
CCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCEEEECHHHCCCCEEEHHHHHHHCCCH
DKITGGFVQAGQSATAIFKALGSLIARPSLDKLGGPVAIYQLSGQAARAGFPAIVYLLAM
HHHCCHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCHHHCCCHHHHHHHHH
LSINLGIVNLFPIPVLDGGKIVLNIIEAIRGKALSQEKESIITMVGVVFMLVLFVAVTWN
HHHCCCEEEEECCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DILRAFVN
HHHHHHCH
>Mature Secondary Structure
MIETLITFIIIFGIIVAIHEYGHLWWAKRSGILVREYAVGMGPKIFAHQAKDGTLYTIRI
CHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEHHCCCCCHHEEEECCCCEEEEEEE
LPLGGYVRLAGWGDDKTEIKKGQAASLVVSKSEVVNPEAENSVSNIVRRINLSEHVELEE
EECCCEEEEEECCCCHHHHCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHCCCHHCCCHHH
AIPMLITEYDFEKELFIEGEVFGEIKRYSVDHDATIIEEDGTEVRIAPLDVQYQSAGVFH
HHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEECCCCEEEEEEEEEEECCCHHHH
KMLTNFGGPLNNFILGIIAFIVLTFVQGGVPSTTNAIGQVEKGTPAYNAGLKAGDKIEAV
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEC
NGTKTADWNNVVTEISGSKGKELKLEVSRSGKSETLSVTPKKMDGSYRVGIMQSMKTGFF
CCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCEEEECHHHCCCCEEEHHHHHHHCCCH
DKITGGFVQAGQSATAIFKALGSLIARPSLDKLGGPVAIYQLSGQAARAGFPAIVYLLAM
HHHCCHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCHHHCCCHHHHHHHHH
LSINLGIVNLFPIPVLDGGKIVLNIIEAIRGKALSQEKESIITMVGVVFMLVLFVAVTWN
HHHCCCEEEEECCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DILRAFVN
HHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11337471