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The map label for this gene is yvaD

Identifier: 15674012

GI number: 15674012

Start: 2105767

End: 2106258

Strand: Reverse

Name: yvaD

Synonym: L89201

Alternate gene names: 15674012

Gene position: 2106258-2105767 (Counterclockwise)

Preceding gene: 15674013

Following gene: 15674011

Centisome position: 89.04

GC content: 31.71

Gene sequence:

>492_bases
ATGAGAACTTTTTCAGAAGTTAAGGAATTATTAGCTGAGCTTGAAATTCCTTATAATATAGTAGAACATCCAGCAAGTCA
TTCAACTGAGGAGTCGGATAACTACATTAAAGATTATGAAGGTTGTCGTTCCAAAACTTTAATCTTAGCCAATAAAAAGT
CTACCCAGTTCTATATGATAATTATGGATGATGCTAAACAGGTTGATATGAATCGCTTGGGAGAAATTATTGGAGTGAAG
AGACTTCACTTTGTCTCGGAAGAACGACTAGAAGATATGCTTGGATTAAACTCCGGAATTGTTTCTCTTTTTGGACTTGT
TGGTAAACATTATAATAATATGCATATTTATTTTGACCAACAAATGCTAGATGACTATCAAATTCAAACTTTTCATCCTA
ATGATAATACCAAAACTATTTTCTTTGCGATGGATGCTTGTTTTACAATTTTGAAGTCGCAGGGTTATGAATATCAAATT
ATTGATTTATAA

Upstream 100 bases:

>100_bases
TCGGGGATTACTAGGCTACTAAACAAAATATAAAAATAAGTTGTCTTATATAAATTAATTTTATCGGTATTTTTCTAAAA
GTGAATAAAGGAGAGAATTG

Downstream 100 bases:

>100_bases
ATTAAAACTCTTACTTGTTAAGAGTTTTTTTGTAATCAATCTATTGAGTCTGAAAACTAATTCTTGTATAATAGCAATAT
GTTAACTTTCCCACTCATCA

Product: hypothetical protein

Products: NA

Alternate protein names: Prolyl-tRNA deacylase proX [H]

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MRTFSEVKELLAELEIPYNIVEHPASHSTEESDNYIKDYEGCRSKTLILANKKSTQFYMIIMDDAKQVDMNRLGEIIGVK
RLHFVSEERLEDMLGLNSGIVSLFGLVGKHYNNMHIYFDQQMLDDYQIQTFHPNDNTKTIFFAMDACFTILKSQGYEYQI
IDL

Sequences:

>Translated_163_residues
MRTFSEVKELLAELEIPYNIVEHPASHSTEESDNYIKDYEGCRSKTLILANKKSTQFYMIIMDDAKQVDMNRLGEIIGVK
RLHFVSEERLEDMLGLNSGIVSLFGLVGKHYNNMHIYFDQQMLDDYQIQTFHPNDNTKTIFFAMDACFTILKSQGYEYQI
IDL
>Mature_163_residues
MRTFSEVKELLAELEIPYNIVEHPASHSTEESDNYIKDYEGCRSKTLILANKKSTQFYMIIMDDAKQVDMNRLGEIIGVK
RLHFVSEERLEDMLGLNSGIVSLFGLVGKHYNNMHIYFDQQMLDDYQIQTFHPNDNTKTIFFAMDACFTILKSQGYEYQI
IDL

Specific function: Functions in trans to edit the amino acid moiety from incorrectly charged Ala-tRNA(Pro). Has weak activity on correctly charged tRNA(Ala), tRNA(Gly) as well as tRNA(Cys), tRNA(Met), tRNA(Pro), tRNA(Ser) and tRNA(Leu) [H]

COG id: COG3760

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 19007; Mature: 19007

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFSEVKELLAELEIPYNIVEHPASHSTEESDNYIKDYEGCRSKTLILANKKSTQFYMI
CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEE
IMDDAKQVDMNRLGEIIGVKRLHFVSEERLEDMLGLNSGIVSLFGLVGKHYNNMHIYFDQ
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECH
QMLDDYQIQTFHPNDNTKTIFFAMDACFTILKSQGYEYQIIDL
HHCCCEEEEEECCCCCCEEEEEEHHHHHHHHHCCCCEEEEEEC
>Mature Secondary Structure
MRTFSEVKELLAELEIPYNIVEHPASHSTEESDNYIKDYEGCRSKTLILANKKSTQFYMI
CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEE
IMDDAKQVDMNRLGEIIGVKRLHFVSEERLEDMLGLNSGIVSLFGLVGKHYNNMHIYFDQ
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECH
QMLDDYQIQTFHPNDNTKTIFFAMDACFTILKSQGYEYQIIDL
HHCCCEEEEEECCCCCCEEEEEEHHHHHHHHHCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10085076 [H]