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The map label for this gene is rpe

Identifier: 15673906

GI number: 15673906

Start: 2003188

End: 2003838

Strand: Reverse

Name: rpe

Synonym: L0047

Alternate gene names: 15673906

Gene position: 2003838-2003188 (Counterclockwise)

Preceding gene: 15673907

Following gene: 15673905

Centisome position: 84.71

GC content: 36.56

Gene sequence:

>651_bases
ATGAAAAATAAAATTGCTCCATCAATTTTGTCAGCAGACTTTGGAAATTTTGCAAGAGATGTGAAACGTTTAGAATCTGC
TGGAGCTGACCTTGTACATATTGACGTAATGGACGGACATTTTGTGGATAATTTAACCTTTGGAGCTGGCGTTGTTTCGG
CACTTCGCGTACAAACTCATTTATTTTTCGATGTTCACATGATGGTTGAAAATCCTGAAAAATATGTGGAGGATTTTGCA
AAGGCAGGAGCTGATAGCATGAGTATTCATGTTGAAGCAACTCATCATATTCACGGAGCACTTCAAAAAATTAAGAATGC
CGGCATGAAAGCTTCGGTAGTTATTAATCCTGGAACTCCTGTAGAGGCGATTAAAACTGTTTTACCACTTGTGGATATGG
TCTTAGTAATGACAGTCAATCCTGGTTTTGGGGGTCAAAAATTTATTCCTGAAATGATGGATAAAGTTCGTGAACTCGCT
CAAATTCGGACTGATAAAAAGCTTGATTTTGAAATCGAAGTTGATGGTGGAATTGATGACCAAACAATTAAAGTTGCTAA
AGCTGCCGGAGCTAATGTTTTTGTTGCAGGGTCATTTATTTTTAATGGTGAAGTTGAGAAAAATATTGAAAAACTTCGTG
TAAATTTATAA

Upstream 100 bases:

>100_bases
GAAGAACTTCATGATGATTCATCAGAAAATAGTGGTGAATAAGTGTTTTTAGTTTCAAAAGATAAATTACTAATTCAAGT
TATTTAGAGAGAGGATAGAA

Downstream 100 bases:

>100_bases
AATTCTCAAAAAGTTACTGACAGCTTTTCTGTCAGTAAACTTTAGGAATTGATTTAAAGTTTTTAGAAATGTAGGAAAAT
AAAAAATCAAGATGGAAGTC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKNKIAPSILSADFGNFARDVKRLESAGADLVHIDVMDGHFVDNLTFGAGVVSALRVQTHLFFDVHMMVENPEKYVEDFA
KAGADSMSIHVEATHHIHGALQKIKNAGMKASVVINPGTPVEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELA
QIRTDKKLDFEIEVDGGIDDQTIKVAKAAGANVFVAGSFIFNGEVEKNIEKLRVNL

Sequences:

>Translated_216_residues
MKNKIAPSILSADFGNFARDVKRLESAGADLVHIDVMDGHFVDNLTFGAGVVSALRVQTHLFFDVHMMVENPEKYVEDFA
KAGADSMSIHVEATHHIHGALQKIKNAGMKASVVINPGTPVEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELA
QIRTDKKLDFEIEVDGGIDDQTIKVAKAAGANVFVAGSFIFNGEVEKNIEKLRVNL
>Mature_216_residues
MKNKIAPSILSADFGNFARDVKRLESAGADLVHIDVMDGHFVDNLTFGAGVVSALRVQTHLFFDVHMMVENPEKYVEDFA
KAGADSMSIHVEATHHIHGALQKIKNAGMKASVVINPGTPVEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELA
QIRTDKKLDFEIEVDGGIDDQTIKVAKAAGANVFVAGSFIFNGEVEKNIEKLRVNL

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=215, Percent_Identity=45.5813953488372, Blast_Score=181, Evalue=5e-46,
Organism=Homo sapiens, GI219879828, Length=215, Percent_Identity=43.7209302325581, Blast_Score=168, Evalue=3e-42,
Organism=Homo sapiens, GI24307923, Length=170, Percent_Identity=38.8235294117647, Blast_Score=108, Evalue=4e-24,
Organism=Escherichia coli, GI1789788, Length=214, Percent_Identity=46.2616822429907, Blast_Score=185, Evalue=2e-48,
Organism=Escherichia coli, GI1790523, Length=201, Percent_Identity=42.2885572139304, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI1790754, Length=172, Percent_Identity=31.3953488372093, Blast_Score=102, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17552948, Length=201, Percent_Identity=47.2636815920398, Blast_Score=176, Evalue=6e-45,
Organism=Saccharomyces cerevisiae, GI6322341, Length=216, Percent_Identity=47.6851851851852, Blast_Score=192, Evalue=5e-50,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=42.9245283018868, Blast_Score=175, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23543; Mature: 23543

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKIAPSILSADFGNFARDVKRLESAGADLVHIDVMDGHFVDNLTFGAGVVSALRVQTH
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
LFFDVHMMVENPEKYVEDFAKAGADSMSIHVEATHHIHGALQKIKNAGMKASVVINPGTP
HEEEEEEEECCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCCC
VEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELAQIRTDKKLDFEIEVDGGIDD
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
QTIKVAKAAGANVFVAGSFIFNGEVEKNIEKLRVNL
HHEEEEHHCCCEEEEEEEEEECCHHHHHHHHHEECC
>Mature Secondary Structure
MKNKIAPSILSADFGNFARDVKRLESAGADLVHIDVMDGHFVDNLTFGAGVVSALRVQTH
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
LFFDVHMMVENPEKYVEDFAKAGADSMSIHVEATHHIHGALQKIKNAGMKASVVINPGTP
HEEEEEEEECCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCCC
VEAIKTVLPLVDMVLVMTVNPGFGGQKFIPEMMDKVRELAQIRTDKKLDFEIEVDGGIDD
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
QTIKVAKAAGANVFVAGSFIFNGEVEKNIEKLRVNL
HHEEEEHHCCCEEEEEEEEEECCHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA