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The map label for this gene is kdgR

Identifier: 15673615

GI number: 15673615

Start: 1680202

End: 1680885

Strand: Direct

Name: kdgR

Synonym: L0240

Alternate gene names: 15673615

Gene position: 1680202-1680885 (Clockwise)

Preceding gene: 15673601

Following gene: 15673631

Centisome position: 71.03

GC content: 36.84

Gene sequence:

>684_bases
ATGAATGAATTGAATTTTAATCTACAGAATCAGGCCTATAATCAAATTACAGGCAAAATTCTCAGGAATGAATATCGTCC
TGGACAAAAAATTTCACAAAAAAATATCGAAATTGATTTGCAATTAGGCCGAACTCCTGTCAGAGAGGCACTTCTTCGTT
TACGTCGTGATGGACTCATTTACAGCATCCCTCAATCAGGAACCTTCGTCACAAAAATTGATTTAGATGCTGCCATCAAT
GCTCGATTCATTCGAGAAAATTTAGAAGCCAAAATTGTTTCCGAAGCCGCGGCTTTAGAGAATAATAATCTTTTACTCAA
CCAAGCGCGTGATGCAATTGAACTTCAAGAACAATATGCTGCTAAAGCAGAATATCACAATTTTTTTAATGCCGATGAAG
AATTTCATAAAACTTTTTATTTAATGACTAACCATGCCCAAGTCTGGGACTGGCTTCAAACCATTAATATTCAGTTCAAT
CGTTTCCGTTGGTTACGTCTTGCGATTTCTGATTTACCATGGAATACCTTGATTGAGCAACACAAGGAAATACTCACCGC
TGTTGAAAATCATGATGGAGAACAAGCTGTCACAGCAGCTGCCAAACATTTGCACTTGATGTTTGACGAAGAAATGGCAG
TTTTACAAGCTTTTCCTGAATACTTTGATAATTTACCCGAATAA

Upstream 100 bases:

>100_bases
TTAAGAAACCGTTGTCAAGAATATATTAAAAAAAAGACATTATTTTAAAAGAATACCTTTATTATTTGACTTTACCGCCC
CTCTGCTCTATAATTACAGA

Downstream 100 bases:

>100_bases
AAAACTCTGACGGAATTCCGACAGAGTTTTTTATAAGTAACTCATTTATTTTACATTTTTAGAATCTGGAATTAAAAATG
AAGTAAAGAAAGCAATAATA

Product: GntR family transcription regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MNELNFNLQNQAYNQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLIYSIPQSGTFVTKIDLDAAIN
ARFIRENLEAKIVSEAAALENNNLLLNQARDAIELQEQYAAKAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFN
RFRWLRLAISDLPWNTLIEQHKEILTAVENHDGEQAVTAAAKHLHLMFDEEMAVLQAFPEYFDNLPE

Sequences:

>Translated_227_residues
MNELNFNLQNQAYNQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLIYSIPQSGTFVTKIDLDAAIN
ARFIRENLEAKIVSEAAALENNNLLLNQARDAIELQEQYAAKAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFN
RFRWLRLAISDLPWNTLIEQHKEILTAVENHDGEQAVTAAAKHLHLMFDEEMAVLQAFPEYFDNLPE
>Mature_227_residues
MNELNFNLQNQAYNQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLIYSIPQSGTFVTKIDLDAAIN
ARFIRENLEAKIVSEAAALENNNLLLNQARDAIELQEQYAAKAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFN
RFRWLRLAISDLPWNTLIEQHKEILTAVENHDGEQAVTAAAKHLHLMFDEEMAVLQAFPEYFDNLPE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=225, Percent_Identity=27.5555555555556, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26514; Mature: 26514

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELNFNLQNQAYNQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLI
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCE
YSIPQSGTFVTKIDLDAAINARFIRENLEAKIVSEAAALENNNLLLNQARDAIELQEQYA
EECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH
AKAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFNRFRWLRLAISDLPWNTLIEQ
HHHHHHHHCCCCHHHHHEEEEEECCHHHHHHHHHHCCCHHHHHEEEHHHHHCCHHHHHHH
HKEILTAVENHDGEQAVTAAAKHLHLMFDEEMAVLQAFPEYFDNLPE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNELNFNLQNQAYNQITGKILRNEYRPGQKISQKNIEIDLQLGRTPVREALLRLRRDGLI
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCE
YSIPQSGTFVTKIDLDAAINARFIRENLEAKIVSEAAALENNNLLLNQARDAIELQEQYA
EECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHH
AKAEYHNFFNADEEFHKTFYLMTNHAQVWDWLQTINIQFNRFRWLRLAISDLPWNTLIEQ
HHHHHHHHCCCCHHHHHEEEEEECCHHHHHHHHHHCCCHHHHHEEEHHHHHCCHHHHHHH
HKEILTAVENHDGEQAVTAAAKHLHLMFDEEMAVLQAFPEYFDNLPE
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]