Click here to switch to the map view.

The map label for this gene is ymcF

Identifier: 15673185

GI number: 15673185

Start: 1223254

End: 1224270

Strand: Direct

Name: ymcF

Synonym: L22960

Alternate gene names: 15673185

Gene position: 1223254-1224270 (Clockwise)

Preceding gene: 30024027

Following gene: 15673186

Centisome position: 51.71

GC content: 31.76

Gene sequence:

>1017_bases
ATGATAATAAAAAATAAGATGGTAAAAAGACTTATAAGTACTTTTTTAATGTCATTATTGCTTGCATCAATGATGTTAGT
AATTGGAGCTGGAAATGTTTATGCTCAAGGTTCTGTTTCGAGTACGAGTCTACAGGTCTCTGCCGATGGTTCTGATTACT
ATATCATAGGTTCTGACTTTTATAATCACTTCGTTAGGCCTACAACCGTTGACTTAGCGAAAAATAAAGTTGTTTATAAT
AAACAGATACTAACAGTATATAATGGCAGAATAGATAAATGGAAAATGTCTTTCTTGAATCAGGATTCATCAGGAAAATC
CTGGTTCAAATTTTTATCTTATCCAGAAGCAACTAAAGGAGACATAAAAATTACTTATACAACGGATGGGATTAACTATT
CTGATAGTAAACCAAGTCTAGAACAGCTCAAAGGCTACATGGTCGAGCTTCTTAAACCAATTGTATATCCAGATGATGCA
AATAACCAAGAGAATGATATAGAGGTTTCTTTTCAACTTTCTCCTGATACTGATTACATATTGAGCAATTCCAATTTAAA
TAAACAGTTTATTCCTTTTAGCGGAGAGAACTGGTTACAAAATTATAGTCCTTATCCCTTTTTTACTGATCGAAATCAAC
TCCAATTTGTATACCCAGATTATTCTAAAGGAGTAATGGTGAAGTATGTTGATGAGGAAGGAAATGAAATTCATGATCCA
CAAACTATTAGTGGTTCAAAAGGAGATGTTTATGACGCCAGTACAGATCAGTACAAATTGGTCTTAGATGGTTACACATT
AGACACATCTAAACTACCACAAAATAGTATAGGAAATTTTAAAGAAGCGCTTCAAACAGTCACTTATGTTTTTTCTAAAA
ATCCAGTGCTTGCAGCTGATGTGACAGTAAGATATGTAGATAAAGAGAATAATCCTATTTCAGAAGATATCATTTTACAA
GGAAATATTGGTGAAAACTATTATACTGATAAAAAAATATTAAAGATTATACTCTAA

Upstream 100 bases:

>100_bases
GAAATATGTAAGTTTTCGCAAACCTGGATGTTGCAAGAATTAAAGGAGGAACAATCTCACAATTAAAAAGAATTTAGAGA
TTGTATGGAGTTTATTTATT

Downstream 100 bases:

>100_bases
AAGAAGTTCAAGGATATTCATCAGGTCAGTTTTCAGAAAAGGCACAAACAGTTACTTATATATACAAAAAAAATGAGTTA
CCTATTGCAACAGGAAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MIIKNKMVKRLISTFLMSLLLASMMLVIGAGNVYAQGSVSSTSLQVSADGSDYYIIGSDFYNHFVRPTTVDLAKNKVVYN
KQILTVYNGRIDKWKMSFLNQDSSGKSWFKFLSYPEATKGDIKITYTTDGINYSDSKPSLEQLKGYMVELLKPIVYPDDA
NNQENDIEVSFQLSPDTDYILSNSNLNKQFIPFSGENWLQNYSPYPFFTDRNQLQFVYPDYSKGVMVKYVDEEGNEIHDP
QTISGSKGDVYDASTDQYKLVLDGYTLDTSKLPQNSIGNFKEALQTVTYVFSKNPVLAADVTVRYVDKENNPISEDIILQ
GNIGENYYTDKKILKIIL

Sequences:

>Translated_338_residues
MIIKNKMVKRLISTFLMSLLLASMMLVIGAGNVYAQGSVSSTSLQVSADGSDYYIIGSDFYNHFVRPTTVDLAKNKVVYN
KQILTVYNGRIDKWKMSFLNQDSSGKSWFKFLSYPEATKGDIKITYTTDGINYSDSKPSLEQLKGYMVELLKPIVYPDDA
NNQENDIEVSFQLSPDTDYILSNSNLNKQFIPFSGENWLQNYSPYPFFTDRNQLQFVYPDYSKGVMVKYVDEEGNEIHDP
QTISGSKGDVYDASTDQYKLVLDGYTLDTSKLPQNSIGNFKEALQTVTYVFSKNPVLAADVTVRYVDKENNPISEDIILQ
GNIGENYYTDKKILKIIL
>Mature_338_residues
MIIKNKMVKRLISTFLMSLLLASMMLVIGAGNVYAQGSVSSTSLQVSADGSDYYIIGSDFYNHFVRPTTVDLAKNKVVYN
KQILTVYNGRIDKWKMSFLNQDSSGKSWFKFLSYPEATKGDIKITYTTDGINYSDSKPSLEQLKGYMVELLKPIVYPDDA
NNQENDIEVSFQLSPDTDYILSNSNLNKQFIPFSGENWLQNYSPYPFFTDRNQLQFVYPDYSKGVMVKYVDEEGNEIHDP
QTISGSKGDVYDASTDQYKLVLDGYTLDTSKLPQNSIGNFKEALQTVTYVFSKNPVLAADVTVRYVDKENNPISEDIILQ
GNIGENYYTDKKILKIIL

Specific function: Involved in several steps of L.monocytogenes infection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall; Peptidoglycan-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 MucBP domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009459
- InterPro:   IPR019931
- InterPro:   IPR001899 [H]

Pfam domain/function: PF06458 MucBP [H]

EC number: NA

Molecular weight: Translated: 38330; Mature: 38330

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKNKMVKRLISTFLMSLLLASMMLVIGAGNVYAQGSVSSTSLQVSADGSDYYIIGSDF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCEEEECCHH
YNHFVRPTTVDLAKNKVVYNKQILTVYNGRIDKWKMSFLNQDSSGKSWFKFLSYPEATKG
HHCCCCCCEEEHHCCEEEECEEEEEEECCCCCEEEHHHHCCCCCCHHHHHHHCCCCCCCC
DIKITYTTDGINYSDSKPSLEQLKGYMVELLKPIVYPDDANNQENDIEVSFQLSPDTDYI
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEE
LSNSNLNKQFIPFSGENWLQNYSPYPFFTDRNQLQFVYPDYSKGVMVKYVDEEGNEIHDP
EECCCCCCEEECCCCCHHHHCCCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCC
QTISGSKGDVYDASTDQYKLVLDGYTLDTSKLPQNSIGNFKEALQTVTYVFSKNPVLAAD
CCCCCCCCCEECCCCCCEEEEEECEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
VTVRYVDKENNPISEDIILQGNIGENYYTDKKILKIIL
EEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHEEC
>Mature Secondary Structure
MIIKNKMVKRLISTFLMSLLLASMMLVIGAGNVYAQGSVSSTSLQVSADGSDYYIIGSDF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCEEEECCHH
YNHFVRPTTVDLAKNKVVYNKQILTVYNGRIDKWKMSFLNQDSSGKSWFKFLSYPEATKG
HHCCCCCCEEEHHCCEEEECEEEEEEECCCCCEEEHHHHCCCCCCHHHHHHHCCCCCCCC
DIKITYTTDGINYSDSKPSLEQLKGYMVELLKPIVYPDDANNQENDIEVSFQLSPDTDYI
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEE
LSNSNLNKQFIPFSGENWLQNYSPYPFFTDRNQLQFVYPDYSKGVMVKYVDEEGNEIHDP
EECCCCCCEEECCCCCHHHHCCCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCC
QTISGSKGDVYDASTDQYKLVLDGYTLDTSKLPQNSIGNFKEALQTVTYVFSKNPVLAAD
CCCCCCCCCEECCCCCCEEEEEECEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
VTVRYVDKENNPISEDIILQGNIGENYYTDKKILKIIL
EEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA