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The map label for this gene is ykjF

Identifier: 15673068

GI number: 15673068

Start: 1094787

End: 1095275

Strand: Direct

Name: ykjF

Synonym: L94534

Alternate gene names: 15673068

Gene position: 1094787-1095275 (Clockwise)

Preceding gene: 15673067

Following gene: 15673069

Centisome position: 46.28

GC content: 36.4

Gene sequence:

>489_bases
ATGTACGTAGAATTAGTTGATGAAACAGGCCAAGTGCCAAGTGAGATTATTGAACAAACCAAAGAAGTTTTAGCTTTTGC
TGCTAAAAAACTGAACTTGAAAGAATCAACAGAAATGTCAGTAACTTTTGTTGATAATGCTCGTTCACATGAGTTGAATT
TGCAATATCGCGAAACTGACCGACCAACCGATGTTATCTCATTAGAATACAAACCTGATGAATCAGAATTTTTCTTTGAT
GAAGATATGGAATTACCAGAGGAATTGTTGGAAGAAATGGATCCATTTATTGGTGAATTGTTTATTTCAATAGATAAGGC
TGCTGAACAGGCTGCTGATTATGGTCACTCGATTGAACGTGAATATGGTTGGTTAGCTGTTCATGGCTTTTTGCATATCA
ATGGTTATGACCACTACACACCAGAAGAAGAGTCAGAAATGTTTGGTTTGCAAGAGGAGATTTTAACTGCCTATGGACTC
ACAAGATAA

Upstream 100 bases:

>100_bases
TGTCATTAAGATTTACTGACAGAATAATAGAAATAGCTAGAATATTGAGCTACTTAGGGCTATTTTATGAATTATTGTCA
GTAATTAAATAAGGAAAAAA

Downstream 100 bases:

>100_bases
AGATGTAAAACTCTTTAAGAAAAAGGATTTTAATAATGGTAAAAGACCTGTTCAAGAGGATAGGGCCCGTTGGAAAAATC
CTAATTTACTTTCGAGTTTA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLNLKESTEMSVTFVDNARSHELNLQYRETDRPTDVISLEYKPDESEFFFD
EDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFGLQEEILTAYGL
TR

Sequences:

>Translated_162_residues
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLNLKESTEMSVTFVDNARSHELNLQYRETDRPTDVISLEYKPDESEFFFD
EDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFGLQEEILTAYGL
TR
>Mature_162_residues
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLNLKESTEMSVTFVDNARSHELNLQYRETDRPTDVISLEYKPDESEFFFD
EDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFGLQEEILTAYGL
TR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=126, Percent_Identity=34.9206349206349, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_LACLA (Q9CGL0)

Other databases:

- EMBL:   AE005176
- PIR:   F86760
- RefSeq:   NP_267242.1
- ProteinModelPortal:   Q9CGL0
- SMR:   Q9CGL0
- GeneID:   1114726
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L94534
- NMPDR:   fig|272623.1.peg.1118
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- ProtClustDB:   PRK00016
- BioCyc:   LLAC272623:L94534-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18770; Mature: 18770

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLNLKESTEMSVTFVDNARSHELNLQYRETD
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCC
RPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIER
CCCCEEEEEECCCCCCEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHH
EYGWLAVHGFLHINGYDHYTPEEESEMFGLQEEILTAYGLTR
CCCEEEEEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHCCCC
>Mature Secondary Structure
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLNLKESTEMSVTFVDNARSHELNLQYRETD
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCC
RPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIER
CCCCEEEEEECCCCCCEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHH
EYGWLAVHGFLHINGYDHYTPEEESEMFGLQEEILTAYGLTR
CCCEEEEEEEEEECCCCCCCCCCHHHHHCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471