Click here to switch to the map view.

The map label for this gene is yjbC

Identifier: 15672874

GI number: 15672874

Start: 913208

End: 914014

Strand: Direct

Name: yjbC

Synonym: L112952

Alternate gene names: 15672874

Gene position: 913208-914014 (Clockwise)

Preceding gene: 15672873

Following gene: 15672875

Centisome position: 38.6

GC content: 31.97

Gene sequence:

>807_bases
ATGGAAAAAATATTAGAAAAAGCCCCAAAAATAAAAATCATTTTTTTTGATATTGATGATACTTTGAGGGTCAAAGATTC
AGCTTTCATGCCTGAATCAATTACTGAAGTTTTTTATAAACTTCGTGAAAAAGGAATTATGACAGGAATTGCAACGGGAA
GAAATCTTTTCGGAGTTGTTCCAGAAGTTAGGGCATTAAAACCAGATTTCTATGTAGCAATCAATGGTGCCTATGTTGAA
AATGCACAAACAGGAGAAGTATTATATAAAAATACTTTTTCTAAGGAGTTAATTGAAGAAATTATCACTTGGCTGAAAAA
TGAACAAAGTGGATATTCTTTTGTAGCTGCGGATAGTTTGAAAATTTCAAAATGGGATAAAATTGCTAGTGATGCAATTG
GTCCAGTTTATTCTGAATTGGAAGAAAATCCCAATTATTATAAAACAAATGAAATTTATCAAATGTTGACAATTTCTGAC
CATGATGACCAATTAGAATTACCAGAAATTTTATCCGATAAAATTCGTTTGGTTCGTTGGCATCCAAACAGTTCAGATAT
TGTTCCAATGGAAGGTTCTAAAGCAATCGGCTGTCAAAAAGTTTTACAAGAACTTGGTCTGAAAGCTGAGAACATGATGA
ACTTTGGTGATGGACTTAATGACCGTGAACTCTTTGATTTTGCCGGTCTGTCAGTAGCTATGAAGATTTCACATCCTGAA
ATTTTAGAAAAAGCAGATTACATTACTGATTCTGTTGAAAATGATGGAATTCTAAAAGCCTTACAAGCCTTAAAAATTAT
TGATTAA

Upstream 100 bases:

>100_bases
ATTTATGCCATTCAACATCACTTAGTTTAAACCTGAGGAAAAACAAGTTAGAAATATGATATAATTAAGTTTGTACAAAT
AAAATTAAAGTGAAAAAAAG

Downstream 100 bases:

>100_bases
AGCTATCAGTAAAAACTGTCAGTAAAAATTACTGACAGAAATTTATTAACTTATAAAAAGAAAGGAAGGTATTTTTAGAA
ATAAAAATACTAACTAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Phosphatase; Peptidyl-prolyl cis-trans isomerase; PPIase; Rotamase [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MEKILEKAPKIKIIFFDIDDTLRVKDSAFMPESITEVFYKLREKGIMTGIATGRNLFGVVPEVRALKPDFYVAINGAYVE
NAQTGEVLYKNTFSKELIEEIITWLKNEQSGYSFVAADSLKISKWDKIASDAIGPVYSELEENPNYYKTNEIYQMLTISD
HDDQLELPEILSDKIRLVRWHPNSSDIVPMEGSKAIGCQKVLQELGLKAENMMNFGDGLNDRELFDFAGLSVAMKISHPE
ILEKADYITDSVENDGILKALQALKIID

Sequences:

>Translated_268_residues
MEKILEKAPKIKIIFFDIDDTLRVKDSAFMPESITEVFYKLREKGIMTGIATGRNLFGVVPEVRALKPDFYVAINGAYVE
NAQTGEVLYKNTFSKELIEEIITWLKNEQSGYSFVAADSLKISKWDKIASDAIGPVYSELEENPNYYKTNEIYQMLTISD
HDDQLELPEILSDKIRLVRWHPNSSDIVPMEGSKAIGCQKVLQELGLKAENMMNFGDGLNDRELFDFAGLSVAMKISHPE
ILEKADYITDSVENDGILKALQALKIID
>Mature_268_residues
MEKILEKAPKIKIIFFDIDDTLRVKDSAFMPESITEVFYKLREKGIMTGIATGRNLFGVVPEVRALKPDFYVAINGAYVE
NAQTGEVLYKNTFSKELIEEIITWLKNEQSGYSFVAADSLKISKWDKIASDAIGPVYSELEENPNYYKTNEIYQMLTISD
HDDQLELPEILSDKIRLVRWHPNSSDIVPMEGSKAIGCQKVLQELGLKAENMMNFGDGLNDRELFDFAGLSVAMKISHPE
ILEKADYITDSVENDGILKALQALKIID

Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase cyclophilin-type domain [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=273, Percent_Identity=25.2747252747253, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015891
- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR000150
- InterPro:   IPR002130 [H]

Pfam domain/function: PF08282 Hydrolase_3; PF00160 Pro_isomerase [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 30312; Mature: 30312

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKILEKAPKIKIIFFDIDDTLRVKDSAFMPESITEVFYKLREKGIMTGIATGRNLFGVV
CCCHHHHCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEECCCCCHHHCCC
PEVRALKPDFYVAINGAYVENAQTGEVLYKNTFSKELIEEIITWLKNEQSGYSFVAADSL
CHHHHCCCCEEEEEECEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCE
KISKWDKIASDAIGPVYSELEENPNYYKTNEIYQMLTISDHDDQLELPEILSDKIRLVRW
ECHHHHHHHHHHCCHHHHHHHCCCCEEECCCEEEEEEECCCCCCCCHHHHHCCCEEEEEE
HPNSSDIVPMEGSKAIGCQKVLQELGLKAENMMNFGDGLNDRELFDFAGLSVAMKISHPE
CCCCCCEEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHCCCEEEEEECCHH
ILEKADYITDSVENDGILKALQALKIID
HHHHHHHHHCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MEKILEKAPKIKIIFFDIDDTLRVKDSAFMPESITEVFYKLREKGIMTGIATGRNLFGVV
CCCHHHHCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEECCCCCHHHCCC
PEVRALKPDFYVAINGAYVENAQTGEVLYKNTFSKELIEEIITWLKNEQSGYSFVAADSL
CHHHHCCCCEEEEEECEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCE
KISKWDKIASDAIGPVYSELEENPNYYKTNEIYQMLTISDHDDQLELPEILSDKIRLVRW
ECHHHHHHHHHHCCHHHHHHHCCCCEEECCCEEEEEEECCCCCCCCHHHHHCCCEEEEEE
HPNSSDIVPMEGSKAIGCQKVLQELGLKAENMMNFGDGLNDRELFDFAGLSVAMKISHPE
CCCCCCEEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHCCCEEEEEECCHH
ILEKADYITDSVENDGILKALQALKIID
HHHHHHHHHCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA