Click here to switch to the map view.

The map label for this gene is yjaJ

Identifier: 15672869

GI number: 15672869

Start: 909635

End: 910318

Strand: Direct

Name: yjaJ

Synonym: L109379

Alternate gene names: 15672869

Gene position: 909635-910318 (Clockwise)

Preceding gene: 15672868

Following gene: 15672870

Centisome position: 38.45

GC content: 34.21

Gene sequence:

>684_bases
TTGCCTGGTTCAGATAAAACTGTAGATAGTGGAGCGATTTATATCTCAAATACAGAACCTGAATATAAAGCTTATGTTCC
TTATCTTTCAGGAAATCCTAAGCAGCTCATCAACGGAGAACAAGCTTTAGTTTTTGCCCGAGATAGAGATACGTTAGCTA
ATGGGAATTATGGACGCGCCGCTCATCAACGAGAAGTTATGACTGAATTAATGAACAAGATGCTTAGTCTTAATAGTGTT
TTTAAATATCAATCATTTTTAAATGATATTTCATCAGATTTTAAAACGAACATTTCGATAAATCTTGCTAATTTGACCGC
ACTTATGGCTTATAAAGATTGTCTTAACAAGGTAGTTTCTATTCAATATCAAGGGGTAAGTCAAATGGTGGATGGTGGAA
GTTATGAATTCATACCAGAAAATGTGGATTTGGCTATTCAAAATATAATGAGACAAGCAAATGATGAGTCTGTCAATGAT
AAGCTTGATCAAAGTGTCATTACTTATGAAAACTATTTTGGAAGTGAAACTGACCAATATTATATGCCTTCTGCGACGGT
AACTATCAAAGGTGAAAAAAGTGAAACTTATGGAGTGGATACTAAAGGGAGTCTGGTAAAAATAAATAAGGAGAATGCTC
AAGACTATGTTTCAAGTCAAGGAGGAGCTTTAGTCGCTAATTAA

Upstream 100 bases:

>100_bases
CGGTTTAGTAAATCTTGTGAATGACGTTGGAGGAGTATAAGTTGTCAATGATACTAATGGCTCAGATGTCTATCAAGGGA
CTGATTAAGGTAAAATAACT

Downstream 100 bases:

>100_bases
AATAGAGAAAATAAAATAAAATAATGTTAACCAGTTGACATTGTTTTATTTATAGGATATACTTAACTGGTTAACTAAAT
TAATAAATGAAAGGATAATA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPGSDKTVDSGAIYISNTEPEYKAYVPYLSGNPKQLINGEQALVFARDRDTLANGNYGRAAHQREVMTELMNKMLSLNSV
FKYQSFLNDISSDFKTNISINLANLTALMAYKDCLNKVVSIQYQGVSQMVDGGSYEFIPENVDLAIQNIMRQANDESVND
KLDQSVITYENYFGSETDQYYMPSATVTIKGEKSETYGVDTKGSLVKINKENAQDYVSSQGGALVAN

Sequences:

>Translated_227_residues
MPGSDKTVDSGAIYISNTEPEYKAYVPYLSGNPKQLINGEQALVFARDRDTLANGNYGRAAHQREVMTELMNKMLSLNSV
FKYQSFLNDISSDFKTNISINLANLTALMAYKDCLNKVVSIQYQGVSQMVDGGSYEFIPENVDLAIQNIMRQANDESVND
KLDQSVITYENYFGSETDQYYMPSATVTIKGEKSETYGVDTKGSLVKINKENAQDYVSSQGGALVAN
>Mature_226_residues
PGSDKTVDSGAIYISNTEPEYKAYVPYLSGNPKQLINGEQALVFARDRDTLANGNYGRAAHQREVMTELMNKMLSLNSVF
KYQSFLNDISSDFKTNISINLANLTALMAYKDCLNKVVSIQYQGVSQMVDGGSYEFIPENVDLAIQNIMRQANDESVNDK
LDQSVITYENYFGSETDQYYMPSATVTIKGEKSETYGVDTKGSLVKINKENAQDYVSSQGGALVAN

Specific function: Involved in biofilm formation, cell division, autolysis and the regulation of acid and oxidative stress tolerance. May be associated with systemic virulence in blood [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cell envelope (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 25151; Mature: 25020

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGSDKTVDSGAIYISNTEPEYKAYVPYLSGNPKQLINGEQALVFARDRDTLANGNYGRA
CCCCCCCCCCCEEEEECCCCCCEEEECEECCCHHHHCCCCEEEEEEECCCCCCCCCCCCH
AHQREVMTELMNKMLSLNSVFKYQSFLNDISSDFKTNISINLANLTALMAYKDCLNKVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHE
IQYQGVSQMVDGGSYEFIPENVDLAIQNIMRQANDESVNDKLDQSVITYENYFGSETDQY
EHCCCHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCE
YMPSATVTIKGEKSETYGVDTKGSLVKINKENAQDYVSSQGGALVAN
ECCCEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCEEECC
>Mature Secondary Structure 
PGSDKTVDSGAIYISNTEPEYKAYVPYLSGNPKQLINGEQALVFARDRDTLANGNYGRA
CCCCCCCCCCEEEEECCCCCCEEEECEECCCHHHHCCCCEEEEEEECCCCCCCCCCCCH
AHQREVMTELMNKMLSLNSVFKYQSFLNDISSDFKTNISINLANLTALMAYKDCLNKVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHE
IQYQGVSQMVDGGSYEFIPENVDLAIQNIMRQANDESVNDKLDQSVITYENYFGSETDQY
EHCCCHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCE
YMPSATVTIKGEKSETYGVDTKGSLVKINKENAQDYVSSQGGALVAN
ECCCEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12397186 [H]