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The map label for this gene is yibB

Identifier: 15672786

GI number: 15672786

Start: 812936

End: 813670

Strand: Direct

Name: yibB

Synonym: L12942

Alternate gene names: 15672786

Gene position: 812936-813670 (Clockwise)

Preceding gene: 15672785

Following gene: 15672787

Centisome position: 34.37

GC content: 36.87

Gene sequence:

>735_bases
ATGACACTTCAAGAAACGTTGAATAGTGAATATCAAATCAGTTTCGAAGAGGCGCAAGCCACTGCAAAAATAGTGGATGA
TTTAGCGGAGGCTGAGCAAAAACTCAAAAATCTAGAACGTCAAATCAAGGCATTAGGACCAATTAACTTGGATGCCATTG
CTCAATTTGATGAAGTCAATGAACGCTTTACTTTCCTTTCAAGTCAAAAAGATGATTTATTAGAAGCTAAAAATCTTTTA
TTGAGTACAATCGATGACATGAATGATGAAGTTAAAATTCGGTTTAAAACAAGTTTTGATGCGATTCGTGAAAGTTTCAA
AACGACCTTTGCTCAAATGTTTGTTAGTGGGCTTGCTGATTTAGAATTAACAAGCGACAACCTTTTAGAAGCTGGGGTTG
AAATTAAAGTACAACCGCCAGGTAAAAAATTATCAAGTTTAAATTTGATGAGTGGTGGAGAAAAAGCGCTGACAGCTTTA
GCTTTAATTTTTGCAATCTTAAGAGTACGAACAGTACCTTTCGTGGTTCTTGATGAGGTTGAAGCGGCACTTGATGAAGC
CAATGTTAAACGTTTTGGTGATTACATGAATCACTTTGATAATAGTAATCAATTTATTGTTGTAACACACCGTCGTGGAA
CTATGGCGGCAGCAGGTTCAATGTATGGCGTTACAATGGCTGATGCCGGGGTTTCTAAGATGATTTCGGTGAAACTTGAT
TCGGCTATTAATTGA

Upstream 100 bases:

>100_bases
TTTAGAACATCACAATCAAGATTTTATCCAGCAAACACAAGAACTTAACACGAAAAAAACGCGTTATGAAATGCAATTGG
AATAAATCGAAGGACAATTG

Downstream 100 bases:

>100_bases
AATTTAAGATAGTTTTAATCTATAAATGCTACACTATAAATTGATTTTTGAAGGACTGCCTAATTTATGGCTTGGTATAT
GATTTGCCTAAAAATAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTLQETLNSEYQISFEEAQATAKIVDDLAEAEQKLKNLERQIKALGPINLDAIAQFDEVNERFTFLSSQKDDLLEAKNLL
LSTIDDMNDEVKIRFKTSFDAIRESFKTTFAQMFVSGLADLELTSDNLLEAGVEIKVQPPGKKLSSLNLMSGGEKALTAL
ALIFAILRVRTVPFVVLDEVEAALDEANVKRFGDYMNHFDNSNQFIVVTHRRGTMAAAGSMYGVTMADAGVSKMISVKLD
SAIN

Sequences:

>Translated_244_residues
MTLQETLNSEYQISFEEAQATAKIVDDLAEAEQKLKNLERQIKALGPINLDAIAQFDEVNERFTFLSSQKDDLLEAKNLL
LSTIDDMNDEVKIRFKTSFDAIRESFKTTFAQMFVSGLADLELTSDNLLEAGVEIKVQPPGKKLSSLNLMSGGEKALTAL
ALIFAILRVRTVPFVVLDEVEAALDEANVKRFGDYMNHFDNSNQFIVVTHRRGTMAAAGSMYGVTMADAGVSKMISVKLD
SAIN
>Mature_243_residues
TLQETLNSEYQISFEEAQATAKIVDDLAEAEQKLKNLERQIKALGPINLDAIAQFDEVNERFTFLSSQKDDLLEAKNLLL
STIDDMNDEVKIRFKTSFDAIRESFKTTFAQMFVSGLADLELTSDNLLEAGVEIKVQPPGKKLSSLNLMSGGEKALTALA
LIFAILRVRTVPFVVLDEVEAALDEANVKRFGDYMNHFDNSNQFIVVTHRRGTMAAAGSMYGVTMADAGVSKMISVKLDS
AIN

Specific function: Plays an important role in chromosome structure and partitioning. Essential for chromosome partition [H]

COG id: COG1196

COG function: function code D; Chromosome segregation ATPases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SMC family [H]

Homologues:

Organism=Homo sapiens, GI30581135, Length=231, Percent_Identity=25.974025974026, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI110347425, Length=205, Percent_Identity=29.7560975609756, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI110347420, Length=205, Percent_Identity=29.7560975609756, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI110347418, Length=205, Percent_Identity=29.7560975609756, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI50658065, Length=188, Percent_Identity=27.6595744680851, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI50658063, Length=188, Percent_Identity=27.6595744680851, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI71565160, Length=191, Percent_Identity=28.2722513089005, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17553272, Length=220, Percent_Identity=29.0909090909091, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193202684, Length=191, Percent_Identity=26.7015706806283, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17535279, Length=213, Percent_Identity=25.3521126760563, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17552844, Length=110, Percent_Identity=30.9090909090909, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI212656546, Length=265, Percent_Identity=23.7735849056604, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193210872, Length=238, Percent_Identity=24.7899159663866, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115532288, Length=102, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321104, Length=222, Percent_Identity=29.2792792792793, Blast_Score=98, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6323115, Length=179, Percent_Identity=30.1675977653631, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321144, Length=147, Percent_Identity=29.9319727891156, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6322387, Length=241, Percent_Identity=24.4813278008299, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24584683, Length=190, Percent_Identity=30.5263157894737, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19922276, Length=226, Percent_Identity=28.7610619469027, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24649535, Length=202, Percent_Identity=24.7524752475248, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24642555, Length=210, Percent_Identity=27.1428571428571, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24642557, Length=210, Percent_Identity=27.1428571428571, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003395
- InterPro:   IPR010935
- InterPro:   IPR011890 [H]

Pfam domain/function: PF06470 SMC_hinge; PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 26967; Mature: 26836

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLQETLNSEYQISFEEAQATAKIVDDLAEAEQKLKNLERQIKALGPINLDAIAQFDEVN
CCCHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ERFTFLSSQKDDLLEAKNLLLSTIDDMNDEVKIRFKTSFDAIRESFKTTFAQMFVSGLAD
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
LELTSDNLLEAGVEIKVQPPGKKLSSLNLMSGGEKALTALALIFAILRVRTVPFVVLDEV
CEECCCHHHHCCCEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
EAALDEANVKRFGDYMNHFDNSNQFIVVTHRRGTMAAAGSMYGVTMADAGVSKMISVKLD
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCCEEEHHHCCHHHHHEEECC
SAIN
CCCC
>Mature Secondary Structure 
TLQETLNSEYQISFEEAQATAKIVDDLAEAEQKLKNLERQIKALGPINLDAIAQFDEVN
CCHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ERFTFLSSQKDDLLEAKNLLLSTIDDMNDEVKIRFKTSFDAIRESFKTTFAQMFVSGLAD
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
LELTSDNLLEAGVEIKVQPPGKKLSSLNLMSGGEKALTALALIFAILRVRTVPFVVLDEV
CEECCCHHHHCCCEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
EAALDEANVKRFGDYMNHFDNSNQFIVVTHRRGTMAAAGSMYGVTMADAGVSKMISVKLD
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCCEEEHHHCCHHHHHEEECC
SAIN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8654983; 9384377; 7584053; 9701812; 9573042 [H]