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The map label for this gene is rbfA

Identifier: 15672750

GI number: 15672750

Start: 778883

End: 779242

Strand: Direct

Name: rbfA

Synonym: L0375

Alternate gene names: 15672750

Gene position: 778883-779242 (Clockwise)

Preceding gene: 15672749

Following gene: 15672751

Centisome position: 32.93

GC content: 35.83

Gene sequence:

>360_bases
ATGGGAAATTCTTTTCGTAGCGACCGTGTCGCTGTAGAAATTCAACGCGAAATCAATGATATTTTACGAAACAAAGTACG
TGATCCACGTGTTCAAGATGTAAATATCACTGATGTTCAATTGACTGGTGATTTGAGTCAAGCGACTGTCTATTATAGCC
TCTTGTCAAATCTTGCCTCTGATAATGAAAAAGCCGCAACTGCTTTGAAAAAAGCAACCGGACTTTTCAAAAGTGAATTG
GCAAAACGCATGACCATTTTCAAAATTCCAGATTTAACTTTTGCAAAAGATGAATCTGTTGAATATGGTTCAAAAATTGA
TGAGCTTCTTCGTGGGCTTAACAATAAATCAGAATATTAA

Upstream 100 bases:

>100_bases
TAAAAGGTGAGGGCGACTAGTTAAAAATGATGAATTTTATTTAAGTTTATTGTTTCTGGGAGCTTTTACTCATTTTAAAA
CGAAAAAATAGGAGGAGAAA

Downstream 100 bases:

>100_bases
TTAAAAAAGTTACTGACGAAAAAATTGAGTGTATTCTTTAGGTTGAATACATTCTGACAGTTCTGTCAGTAACTTTTTTT
GTCATAAAAATACTGACAGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MGNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLASDNEKAATALKKATGLFKSEL
AKRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNNKSEY

Sequences:

>Translated_119_residues
MGNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLASDNEKAATALKKATGLFKSEL
AKRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNNKSEY
>Mature_118_residues
GNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLASDNEKAATALKKATGLFKSELA
KRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNNKSEY

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=113, Percent_Identity=36.283185840708, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_LACLA (Q9CHG3)

Other databases:

- EMBL:   AE005176
- PIR:   H86720
- RefSeq:   NP_266924.1
- ProteinModelPortal:   Q9CHG3
- SMR:   Q9CHG3
- GeneID:   1114395
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L0375
- NMPDR:   fig|272623.1.peg.788
- HOGENOM:   HBG751055
- OMA:   QMRRAPE
- ProtClustDB:   PRK00521
- BioCyc:   LLAC272623:L0375-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13416; Mature: 13285

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLAS
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
DNEKAATALKKATGLFKSELAKRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNNKSEY
CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GNSFRSDRVAVEIQREINDILRNKVRDPRVQDVNITDVQLTGDLSQATVYYSLLSNLAS
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
DNEKAATALKKATGLFKSELAKRMTIFKIPDLTFAKDESVEYGSKIDELLRGLNNKSEY
CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471