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The map label for this gene is ygiI

Identifier: 15672669

GI number: 15672669

Start: 687395

End: 688168

Strand: Direct

Name: ygiI

Synonym: L87336

Alternate gene names: 15672669

Gene position: 687395-688168 (Clockwise)

Preceding gene: 15672666

Following gene: 15672670

Centisome position: 29.06

GC content: 36.82

Gene sequence:

>774_bases
ATGGAAATTTTTGATACACATACTCATCTAAATACTAGTGAATTTGAAGGACGAATTCAAGATGAATTAGTCCAAGCTCA
AACATTTGGAGTGACAAGAATTAATAATGTTGGAAGTAATTATGAATCAAATGATGCAGCACTTTTGTTGGCTGAGAAAT
TTGAAGAATGCTACGCAACAATTGGCTGGCATCCTGATGATGCTGCTGAATTTGATGACCAAGCTGAAAATTATTTACTG
ACCAAGCTGTCAGCAAAAAAAGTTATTGCTCTTGGAGAAATTGGTTTGGATTATCACTGGATGGTCCGTCCGAAAGAAGA
ACAAGAACGAGTTTTTAGAAGACAAATTCAGATTTCTAAGGAAATGGGTCTGCCTTTTCAAGTACATACACGTGATGCTC
TTGATGATACTTATGAAATTATTAAATCAGAAGGCGTTGGTCCTGCTGGTGCGATTATGCATTCGTTTTCTGGGACAGCC
GATGAGGCACTCAAATTTGTAGAGCTTGGAATGATGATTTCTTTTTCAGGTGTAGTCACTTTTAAGAAGGCTCTTGATGT
TCAGGAGGCTGCGGCTACAGTTCCTTTGGATAAAATTTTAGTGGAAACTGATGCGCCTTATTTAACACCAATGCCATATC
GTGGAAAAGAAAATAGACCAGCTTACACAAAATTTATTGTTGAGAAAATTGCTGAATTACGTGAAATTTCTGCTGATGAA
GTGGCTAAAGCGACAACAGAAAATGCTTTGAGGATTTTTGGTTTGAAAAAATAA

Upstream 100 bases:

>100_bases
TTAATCAATGACAGATTAATAAAAAAGAGAAAAAACTCTAGTAATAAATTGGAAAATTTTTTGCTTAAGAAATTACGGAG
AAGGAATTTCAAATAAGATA

Downstream 100 bases:

>100_bases
ATTTGTATTTATTTTGATTTGGATAGGAGCTATTTTTATGAAAATTATGATTATTGGTAGTTCAGGAAGTGGTAAATCAA
CTTTTGCAAGAGAACTAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MEIFDTHTHLNTSEFEGRIQDELVQAQTFGVTRINNVGSNYESNDAALLLAEKFEECYATIGWHPDDAAEFDDQAENYLL
TKLSAKKVIALGEIGLDYHWMVRPKEEQERVFRRQIQISKEMGLPFQVHTRDALDDTYEIIKSEGVGPAGAIMHSFSGTA
DEALKFVELGMMISFSGVVTFKKALDVQEAAATVPLDKILVETDAPYLTPMPYRGKENRPAYTKFIVEKIAELREISADE
VAKATTENALRIFGLKK

Sequences:

>Translated_257_residues
MEIFDTHTHLNTSEFEGRIQDELVQAQTFGVTRINNVGSNYESNDAALLLAEKFEECYATIGWHPDDAAEFDDQAENYLL
TKLSAKKVIALGEIGLDYHWMVRPKEEQERVFRRQIQISKEMGLPFQVHTRDALDDTYEIIKSEGVGPAGAIMHSFSGTA
DEALKFVELGMMISFSGVVTFKKALDVQEAAATVPLDKILVETDAPYLTPMPYRGKENRPAYTKFIVEKIAELREISADE
VAKATTENALRIFGLKK
>Mature_257_residues
MEIFDTHTHLNTSEFEGRIQDELVQAQTFGVTRINNVGSNYESNDAALLLAEKFEECYATIGWHPDDAAEFDDQAENYLL
TKLSAKKVIALGEIGLDYHWMVRPKEEQERVFRRQIQISKEMGLPFQVHTRDALDDTYEIIKSEGVGPAGAIMHSFSGTA
DEALKFVELGMMISFSGVVTFKKALDVQEAAATVPLDKILVETDAPYLTPMPYRGKENRPAYTKFIVEKIAELREISADE
VAKATTENALRIFGLKK

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=264, Percent_Identity=26.8939393939394, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI225903424, Length=206, Percent_Identity=33.0097087378641, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI225903439, Length=246, Percent_Identity=26.8292682926829, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI110349730, Length=270, Percent_Identity=28.1481481481481, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI226061853, Length=275, Percent_Identity=28, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=28.1481481481481, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=27.734375, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI226061595, Length=232, Percent_Identity=26.7241379310345, Blast_Score=79, Evalue=3e-15,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=37.3076923076923, Blast_Score=170, Evalue=7e-44,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=31.2741312741313, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI87082439, Length=253, Percent_Identity=31.6205533596838, Blast_Score=130, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17559024, Length=281, Percent_Identity=27.4021352313167, Blast_Score=118, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=28.5171102661597, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17565396, Length=224, Percent_Identity=27.6785714285714, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17543026, Length=215, Percent_Identity=28.3720930232558, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24648690, Length=284, Percent_Identity=29.9295774647887, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI221330018, Length=268, Percent_Identity=28.7313432835821, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24586117, Length=268, Percent_Identity=28.7313432835821, Blast_Score=93, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28885; Mature: 28885

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIFDTHTHLNTSEFEGRIQDELVQAQTFGVTRINNVGSNYESNDAALLLAEKFEECYAT
CCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHH
IGWHPDDAAEFDDQAENYLLTKLSAKKVIALGEIGLDYHWMVRPKEEQERVFRRQIQISK
CCCCCCCCHHHHHHHHHHHHHHHCHHHEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
EMGLPFQVHTRDALDDTYEIIKSEGVGPAGAIMHSFSGTADEALKFVELGMMISFSGVVT
HCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FKKALDVQEAAATVPLDKILVETDAPYLTPMPYRGKENRPAYTKFIVEKIAELREISADE
HHHHHHHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
VAKATTENALRIFGLKK
HHHHHHHCCEEEEECCC
>Mature Secondary Structure
MEIFDTHTHLNTSEFEGRIQDELVQAQTFGVTRINNVGSNYESNDAALLLAEKFEECYAT
CCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEHHHHHHHHHHHH
IGWHPDDAAEFDDQAENYLLTKLSAKKVIALGEIGLDYHWMVRPKEEQERVFRRQIQISK
CCCCCCCCHHHHHHHHHHHHHHHCHHHEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
EMGLPFQVHTRDALDDTYEIIKSEGVGPAGAIMHSFSGTADEALKFVELGMMISFSGVVT
HCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FKKALDVQEAAATVPLDKILVETDAPYLTPMPYRGKENRPAYTKFIVEKIAELREISADE
HHHHHHHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
VAKATTENALRIFGLKK
HHHHHHHCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]