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The map label for this gene is 15669623

Identifier: 15669623

GI number: 15669623

Start: 1402418

End: 1402906

Strand: Direct

Name: 15669623

Synonym: MJ1432

Alternate gene names: NA

Gene position: 1402418-1402906 (Clockwise)

Preceding gene: 15669622

Following gene: 15669624

Centisome position: 84.23

GC content: 28.22

Gene sequence:

>489_bases
TTGGAAATAAGGAAAAGATATTTTTTAAGTAAAAAAGATGTTAAAAAAATAAAAAAAGAATTGGAAGTGTTTTTTGAAAA
TGTTGATGAGATAATCCCAAAAAAAGGAAATGTGGAGATAGCTATAACTGATGACTTTGAGATAATATTAGTCGATAAAG
AGCCAATTGCATTTAAAAAAGATGATAAAGTAATTCCAACATTAAAATTGTTATTAAAATCCCTCCCAGATAAAAATTTA
GTTGTTGTTGATATAGGTGCTATAAAATTTTTAATAAATGGAGCAGATGTAATGGCTCCAGGAATTGTAGATGCAGATGA
AAATATTAAAGAGGAGGATGTTGTTTTTGTGGTAGATGAAAACCACAAAAAGCCAATATGTGTTGGAATTGCATTAATGA
ATGGAAAAGAGATGAAAGAAGCAGATAAAGGAAAAGCTATTAAAAACCTTCACTATGTAGGAGACAAAATCTGGAATTTT
AAGGGATAA

Upstream 100 bases:

>100_bases
TGAAGAGATTAGAGACATGATTAAAAGGGTTGGATTAATTCCTAAGGAGAGAACTACTTTGTATAAAATTTTAGAGTAAT
TTATTATAAAAGGTGAGAGG

Downstream 100 bases:

>100_bases
AAATGAATGATAAAAGGTATATGTTAATAATAGCTATTTGTTTAATTTTTTTATCTATATTGGTTTATTCAATACATTTT
TTAATCTTTGGAAAAGTTGA

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MEIRKRYFLSKKDVKKIKKELEVFFENVDEIIPKKGNVEIAITDDFEIILVDKEPIAFKKDDKVIPTLKLLLKSLPDKNL
VVVDIGAIKFLINGADVMAPGIVDADENIKEEDVVFVVDENHKKPICVGIALMNGKEMKEADKGKAIKNLHYVGDKIWNF
KG

Sequences:

>Translated_162_residues
MEIRKRYFLSKKDVKKIKKELEVFFENVDEIIPKKGNVEIAITDDFEIILVDKEPIAFKKDDKVIPTLKLLLKSLPDKNL
VVVDIGAIKFLINGADVMAPGIVDADENIKEEDVVFVVDENHKKPICVGIALMNGKEMKEADKGKAIKNLHYVGDKIWNF
KG
>Mature_162_residues
MEIRKRYFLSKKDVKKIKKELEVFFENVDEIIPKKGNVEIAITDDFEIILVDKEPIAFKKDDKVIPTLKLLLKSLPDKNL
VVVDIGAIKFLINGADVMAPGIVDADENIKEEDVVFVVDENHKKPICVGIALMNGKEMKEADKGKAIKNLHYVGDKIWNF
KG

Specific function: Unknown

COG id: COG2016

COG function: function code J; Predicted RNA-binding protein (contains PUA domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain

Homologues:

Organism=Homo sapiens, GI212276121, Length=165, Percent_Identity=31.5151515151515, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI7662502, Length=165, Percent_Identity=31.5151515151515, Blast_Score=81, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI25153759, Length=156, Percent_Identity=30.1282051282051, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6320844, Length=141, Percent_Identity=36.8794326241135, Blast_Score=95, Evalue=5e-21,
Organism=Drosophila melanogaster, GI18858169, Length=142, Percent_Identity=30.9859154929577, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1432_METJA (Q58827)

Other databases:

- EMBL:   L77117
- PIR:   G64478
- RefSeq:   NP_248436.1
- ProteinModelPortal:   Q58827
- SMR:   Q58827
- GeneID:   1452336
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1432
- NMPDR:   fig|243232.1.peg.1473
- TIGR:   MJ1432
- HOGENOM:   HBG553443
- OMA:   FIANGAD
- ProtClustDB:   PRK14560
- BioCyc:   MJAN243232:MJ_1432-MONOMER
- InterPro:   IPR022430
- InterPro:   IPR015266
- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR016437
- InterPro:   IPR004521
- Gene3D:   G3DSA:3.10.450.120
- PIRSF:   PIRSF005067
- SMART:   SM00359
- TIGRFAMs:   TIGR03684
- TIGRFAMs:   TIGR00451

Pfam domain/function: PF01472 PUA; SSF88697 PUA-like

EC number: NA

Molecular weight: Translated: 18365; Mature: 18365

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRKRYFLSKKDVKKIKKELEVFFENVDEIIPKKGNVEIAITDDFEIILVDKEPIAFKK
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCEECC
DDKVIPTLKLLLKSLPDKNLVVVDIGAIKFLINGADVMAPGIVDADENIKEEDVVFVVDE
CCCCHHHHHHHHHHCCCCCEEEEEECCEEEEECCCHHCCCCCCCCCCCCCCCCEEEEEEC
NHKKPICVGIALMNGKEMKEADKGKAIKNLHYVGDKIWNFKG
CCCCCEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEIRKRYFLSKKDVKKIKKELEVFFENVDEIIPKKGNVEIAITDDFEIILVDKEPIAFKK
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCEECC
DDKVIPTLKLLLKSLPDKNLVVVDIGAIKFLINGADVMAPGIVDADENIKEEDVVFVVDE
CCCCHHHHHHHHHHCCCCCEEEEEECCEEEEECCCHHCCCCCCCCCCCCCCCCEEEEEEC
NHKKPICVGIALMNGKEMKEADKGKAIKNLHYVGDKIWNFKG
CCCCCEEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087