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The map label for this gene is rpoM

Identifier: 15669335

GI number: 15669335

Start: 1087788

End: 1088114

Strand: Reverse

Name: rpoM

Synonym: MJ1148

Alternate gene names: 15669335

Gene position: 1088114-1087788 (Counterclockwise)

Preceding gene: 15669336

Following gene: 15669333

Centisome position: 65.35

GC content: 35.78

Gene sequence:

>327_bases
ATGGTTAAGTTTTGTCCAAAATGTAACAACCTAATGCTACCAAAGGATGGAAAGTTAAAATGTGCTGTCTGTGGTTATGA
AGAAGAAACAACAGCTGAAGGAAGTAAGGAGTATGAATACAAGGAACACTTAGAGAACAAGAAAGAAAAAATTACTGTTA
TTGAAAGTGAGGGATTAGAGACATTACCAACAACAAGAATCGAATGTCCAAAATGTGGGCATAATGAAGCTTACTGGTGG
CTACAACAAACAAGATGTGCTGATGAACCAGAAACAAGATTCTATAAGTGTAAGAAATGCGGTCATACATGGAGAGAGTA
TGATTAA

Upstream 100 bases:

>100_bases
GGAGATGATGCAAAAGAGGCTGAATTCTTTGATTTAAATAATTTGCCTAAATTAGCTTTTGACCATGAAAAAATAATTAA
AGATTACATGAGGTGGAAAA

Downstream 100 bases:

>100_bases
TTTATTTTCTACTTAATTTTCTTCTAACAGCTATATAGAGATTACCCAATAAAATTAGAGATGTAACCCTTATAATTGGC
TCTAATATCCATAATGATTT

Product: transcription-associated protein TFIIS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MVKFCPKCNNLMLPKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIESEGLETLPTTRIECPKCGHNEAYWW
LQQTRCADEPETRFYKCKKCGHTWREYD

Sequences:

>Translated_108_residues
MVKFCPKCNNLMLPKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIESEGLETLPTTRIECPKCGHNEAYWW
LQQTRCADEPETRFYKCKKCGHTWREYD
>Mature_108_residues
MVKFCPKCNNLMLPKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIESEGLETLPTTRIECPKCGHNEAYWW
LQQTRCADEPETRFYKCKKCGHTWREYD

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger

Homologues:

Organism=Homo sapiens, GI302058278, Length=112, Percent_Identity=33.9285714285714, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320250, Length=114, Percent_Identity=36.8421052631579, Blast_Score=73, Evalue=7e-15,
Organism=Drosophila melanogaster, GI78707272, Length=112, Percent_Identity=33.9285714285714, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOM_METJA (Q58548)

Other databases:

- EMBL:   L77117
- PIR:   C64443
- RefSeq:   NP_248140.1
- ProteinModelPortal:   Q58548
- SMR:   Q58548
- GeneID:   1452044
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1148
- NMPDR:   fig|243232.1.peg.1177
- TIGR:   MJ1148
- HOGENOM:   HBG717463
- OMA:   HKWREDD
- ProtClustDB:   CLSK876472
- BioCyc:   MJAN243232:MJ_1148-MONOMER
- BRENDA:   2.7.7.6
- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222
- SMART:   SM00661
- SMART:   SM00440
- TIGRFAMs:   TIGR01384

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C

EC number: =2.7.7.6

Molecular weight: Translated: 12750; Mature: 12750

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS01030 RNA_POL_M_15KD; PS00466 ZF_TFIIS_1; PS51133 ZF_TFIIS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
8.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
10.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKFCPKCNNLMLPKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIESEGLE
CCCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCC
TLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWREYD
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVKFCPKCNNLMLPKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIESEGLE
CCCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCC
TLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWREYD
CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087