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The map label for this gene is rnp3

Identifier: 15669326

GI number: 15669326

Start: 1079330

End: 1080028

Strand: Reverse

Name: rnp3

Synonym: MJ1139

Alternate gene names: 15669326

Gene position: 1080028-1079330 (Counterclockwise)

Preceding gene: 15669327

Following gene: 15669324

Centisome position: 64.87

GC content: 29.9

Gene sequence:

>699_bases
ATGAGAATCGATATAAACAGAATAGAAAAGGAAGAGGATATAAAATTACTTAAAGAACTGAAATGGAATGGATTTGTTTT
TTATCAGTATGATGATGAATTCAGCAAAGATAGATATGAAGAGGTTAAAGCAATAGCTGAGAGTTATAAATTAAAGGTAT
ATTCTGGAGTTAAAATAAAGACAGAAAGTTCTAAACAACTAAGGGATAAGGTAAAAAAGTTTAGAAATAAATGCCACATT
ATATTGATTGAAGGAGGGGTTTTAAAGATAAATAGGGCTGCAGTTGAGTTGCATGATGTTGATATATTATCAACTCCTGA
ACTTGGAAGGAAAGATAGTGGAATAGACCATGTATTGGCAAGATTGGCATCAAATCATAGAGTTGCTATTGAACTCAATT
TTAAGACTCTTTTAAATAAAGATGGCTATGAAAGGGCAAGAACTTTGCTATTTTTTAGAAACAACTTAAAATTGGCTAAG
AAGTTTGATGTGCCTGTTGTTATATCTACAGATGCTGAAAATAAATATCAGATAAAAAATCCTTATGATTTAAGAGCTTT
TTTAAATACGTTGGTTGAGCCGTTGTATGCAAAAAAGATTATGGAAACTGCCTATAAGATATGTGATTTTAGGGATTATT
TGATGAGAGATAATGTTGTTAGATATGGAGTGGAAATTATAAAAGAAGAAAAAGAATGA

Upstream 100 bases:

>100_bases
ATGTTACGTTTGCAATATTGGAAAATAGTATAGATGCAGTTGGAATATATAAAAAAGATAAGAGCAAAGTTGTTAGATTT
AAATAAAATTTTGTGATAAC

Downstream 100 bases:

>100_bases
AAAAAGAATAATTATAGTTTTTTACGATTATTAAAAATTAAAAATGATATTTGAACGCCCTAAAGGCGTTCATCAGTGCA
TTATATATCTAAATATCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: RNase P component 3

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MRIDINRIEKEEDIKLLKELKWNGFVFYQYDDEFSKDRYEEVKAIAESYKLKVYSGVKIKTESSKQLRDKVKKFRNKCHI
ILIEGGVLKINRAAVELHDVDILSTPELGRKDSGIDHVLARLASNHRVAIELNFKTLLNKDGYERARTLLFFRNNLKLAK
KFDVPVVISTDAENKYQIKNPYDLRAFLNTLVEPLYAKKIMETAYKICDFRDYLMRDNVVRYGVEIIKEEKE

Sequences:

>Translated_232_residues
MRIDINRIEKEEDIKLLKELKWNGFVFYQYDDEFSKDRYEEVKAIAESYKLKVYSGVKIKTESSKQLRDKVKKFRNKCHI
ILIEGGVLKINRAAVELHDVDILSTPELGRKDSGIDHVLARLASNHRVAIELNFKTLLNKDGYERARTLLFFRNNLKLAK
KFDVPVVISTDAENKYQIKNPYDLRAFLNTLVEPLYAKKIMETAYKICDFRDYLMRDNVVRYGVEIIKEEKE
>Mature_232_residues
MRIDINRIEKEEDIKLLKELKWNGFVFYQYDDEFSKDRYEEVKAIAESYKLKVYSGVKIKTESSKQLRDKVKKFRNKCHI
ILIEGGVLKINRAAVELHDVDILSTPELGRKDSGIDHVLARLASNHRVAIELNFKTLLNKDGYERARTLLFFRNNLKLAK
KFDVPVVISTDAENKYQIKNPYDLRAFLNTLVEPLYAKKIMETAYKICDFRDYLMRDNVVRYGVEIIKEEKE

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG1603

COG function: function code J; RNase P/RNase MRP subunit p30

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 3 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP3_METJA (Q58539)

Other databases:

- EMBL:   L77117
- PIR:   B64442
- RefSeq:   NP_248131.1
- ProteinModelPortal:   Q58539
- SMR:   Q58539
- GeneID:   1452035
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1139
- NMPDR:   fig|243232.1.peg.1168
- TIGR:   MJ1139
- HOGENOM:   HBG541018
- OMA:   IYGIKAP
- ProtClustDB:   CLSK876467
- BioCyc:   MJAN243232:MJ_1139-MONOMER
- BRENDA:   3.1.26.5
- HAMAP:   MF_00756
- InterPro:   IPR016195
- InterPro:   IPR002738

Pfam domain/function: PF01876 RNase_P_p30; SSF89550 PHP-like

EC number: =3.1.26.5

Molecular weight: Translated: 27346; Mature: 27346

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDINRIEKEEDIKLLKELKWNGFVFYQYDDEFSKDRYEEVKAIAESYKLKVYSGVKIK
CCCCHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEEEECEEEE
TESSKQLRDKVKKFRNKCHIILIEGGVLKINRAAVELHDVDILSTPELGRKDSGIDHVLA
ECCHHHHHHHHHHHHCCEEEEEEECCEEEEEHEEEEEECCEEECCCCCCCCCCCHHHHHH
RLASNHRVAIELNFKTLLNKDGYERARTLLFFRNNLKLAKKFDVPVVISTDAENKYQIKN
HHHCCCEEEEEEEHHHHHCCCCHHHHHHHHHEECCCCEEEECCCCEEEECCCCCCEEECC
PYDLRAFLNTLVEPLYAKKIMETAYKICDFRDYLMRDNVVRYGVEIIKEEKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIDINRIEKEEDIKLLKELKWNGFVFYQYDDEFSKDRYEEVKAIAESYKLKVYSGVKIK
CCCCHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEEEECEEEE
TESSKQLRDKVKKFRNKCHIILIEGGVLKINRAAVELHDVDILSTPELGRKDSGIDHVLA
ECCHHHHHHHHHHHHCCEEEEEEECCEEEEEHEEEEEECCEEECCCCCCCCCCCHHHHHH
RLASNHRVAIELNFKTLLNKDGYERARTLLFFRNNLKLAKKFDVPVVISTDAENKYQIKN
HHHCCCEEEEEEEHHHHHCCCCHHHHHHHHHEECCCCEEEECCCCEEEECCCCCCEEECC
PYDLRAFLNTLVEPLYAKKIMETAYKICDFRDYLMRDNVVRYGVEIIKEEKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087