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The map label for this gene is rpl30e

Identifier: 15669233

GI number: 15669233

Start: 981632

End: 981964

Strand: Direct

Name: rpl30e

Synonym: MJ1044

Alternate gene names: 15669233

Gene position: 981632-981964 (Clockwise)

Preceding gene: 15669232

Following gene: 15669234

Centisome position: 58.96

GC content: 36.04

Gene sequence:

>333_bases
ATGAGAAGGAGGGAGAATATGGATGTGAATAAAGCAATTAGAACCGCAGTAGATACAGGTAAAGTAATTTTAGGTTCAAA
AAGAACAATAAAATTTGTTAAACACGGAGAAGGTAAGTTAGTAGTTTTAGCAGGAAACATTCCAAAAGATTTAGAAGAGG
ATGTCAAATACTACGCTAAGTTATCAAACATCCCAGTTTATCAACATAAAATAACATCATTAGAACTGGGAGCGGTTTGT
GGGAAACCTTTCCCAGTTGCTGCTCTTTTGGTTTTAGATGAAGGGCTCTCAAACATTATGGAGCTGGTAGAGAAAAAGGA
AGGTGGTGAATAA

Upstream 100 bases:

>100_bases
AATGTTTTATATTGAATATTGACATTTTTTAGATGTCTAAGTTCCAAAGTTAAAATATATTTGCCTGCGAAAGTCCTAAG
AAATCCCTCCGGAGTAAAAA

Downstream 100 bases:

>100_bases
TGGCTAAGGTAAGATTAACAACAGAAGAGATTATGAAGATTGGATTTTTTGAAAAAATTGCAAATGTCCCTATTCTTGAC
TGTGTATTAAATGATGAAAG

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MRRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVC
GKPFPVAALLVLDEGLSNIMELVEKKEGGE

Sequences:

>Translated_110_residues
MRRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVC
GKPFPVAALLVLDEGLSNIMELVEKKEGGE
>Mature_110_residues
MRRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVC
GKPFPVAALLVLDEGLSNIMELVEKKEGGE

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family

Homologues:

Organism=Homo sapiens, GI4506631, Length=101, Percent_Identity=33.6633663366337, Blast_Score=77, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17508679, Length=93, Percent_Identity=35.4838709677419, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321408, Length=93, Percent_Identity=34.4086021505376, Blast_Score=64, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17864264, Length=97, Percent_Identity=36.0824742268041, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24585096, Length=97, Percent_Identity=36.0824742268041, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30E_METJA (P54061)

Other databases:

- EMBL:   L77117
- PIR:   C64430
- RefSeq:   NP_248038.1
- PDB:   3CPQ
- PDBsum:   3CPQ
- ProteinModelPortal:   P54061
- SMR:   P54061
- GeneID:   1451941
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1044
- NMPDR:   fig|243232.1.peg.1075
- TIGR:   MJ1044
- HOGENOM:   HBG553631
- OMA:   KYFRVCT
- ProtClustDB:   PRK01018
- BioCyc:   MJAN243232:MJ_1044-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00481
- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038
- PANTHER:   PTHR11449

Pfam domain/function: PF01248 Ribosomal_L7Ae

EC number: NA

Molecular weight: Translated: 12134; Mature: 12134

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00709 RIBOSOMAL_L30E_1; PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAK
CCCCCCCCHHHHHHHHHCCCCEEECCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHH
LSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNIMELVEKKEGGE
HCCCCCCHHCCCEEEECHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRRRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAK
CCCCCCCCHHHHHHHHHCCCCEEECCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHH
LSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNIMELVEKKEGGE
HCCCCCCHHCCCEEEECHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087