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The map label for this gene is rnp4

Identifier: 15669152

GI number: 15669152

Start: 894936

End: 895322

Strand: Direct

Name: rnp4

Synonym: MJ0962

Alternate gene names: 15669152

Gene position: 894936-895322 (Clockwise)

Preceding gene: 15669151

Following gene: 15669155

Centisome position: 53.75

GC content: 32.3

Gene sequence:

>387_bases
ATGAAAAAGTTCTTAGAAAAAAAGCTAAAGAAGATAGCTTATGAAAGAATTGATATATTGATGAGCTTAGCTGAAGAAGA
GGCAAAGAAAGGTAATTGGGATAGAGCTAAGAGATATGTATATTTAGCAAGAAGAATAGCCATGAAAATGAGAATAAGAT
TCCCTAAAAAATGGAAGAGAAGGATATGCAAAAAATGTGGAACCTTTTTGTTGTATGGAAGGAATGCAAGGGTTAGAATT
AAGAGCAAGAGATATCCCCACGTTGTTATAACATGCTTAGAATGCGGAGCAATATATAGAATCCCAATGATTAGAGAGAA
GAAAGAAAAGAGAAGGAAAAAATTAGAGGAAAGATTAAAAGCAAAATCAAACTCACAAACCTCTTAA

Upstream 100 bases:

>100_bases
TGGCTATTGGTTTATCTGAAAAGGATGTTAATGATGCCTTAGAATATTTAAAGAAAGCTGGAGATATATACAATCCAAGA
TATGGATTCTGGGGTTTATT

Downstream 100 bases:

>100_bases
CTTTTTTGTTTCTTCCATATCAACAACGAAATCATCATCTTTTTTGATAATTTTTACTTTATAATCCCTATATGCCGATT
TTATGGAAATTTTTTCATCT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase P component 4

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MKKFLEKKLKKIAYERIDILMSLAEEEAKKGNWDRAKRYVYLARRIAMKMRIRFPKKWKRRICKKCGTFLLYGRNARVRI
KSKRYPHVVITCLECGAIYRIPMIREKKEKRRKKLEERLKAKSNSQTS

Sequences:

>Translated_128_residues
MKKFLEKKLKKIAYERIDILMSLAEEEAKKGNWDRAKRYVYLARRIAMKMRIRFPKKWKRRICKKCGTFLLYGRNARVRI
KSKRYPHVVITCLECGAIYRIPMIREKKEKRRKKLEERLKAKSNSQTS
>Mature_128_residues
MKKFLEKKLKKIAYERIDILMSLAEEEAKKGNWDRAKRYVYLARRIAMKMRIRFPKKWKRRICKKCGTFLLYGRNARVRI
KSKRYPHVVITCLECGAIYRIPMIREKKEKRRKKLEERLKAKSNSQTS

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG2023

COG function: function code J; RNase P subunit RPR2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP4_METJA (Q58372)

Other databases:

- EMBL:   L77117
- PIR:   B64420
- RefSeq:   NP_247957.1
- ProteinModelPortal:   Q58372
- SMR:   Q58372
- GeneID:   1451860
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0962
- NMPDR:   fig|243232.1.peg.994
- TIGR:   MJ0962
- HOGENOM:   HBG731499
- OMA:   HVVITCL
- ProtClustDB:   CLSK2749941
- BioCyc:   MJAN243232:MJ_0962-MONOMER
- BRENDA:   3.1.26.5
- HAMAP:   MF_00757
- InterPro:   IPR016432
- InterPro:   IPR007175
- PANTHER:   PTHR14742
- PIRSF:   PIRSF004878

Pfam domain/function: PF04032 Rpr2

EC number: =3.1.26.5

Molecular weight: Translated: 15567; Mature: 15567

Theoretical pI: Translated: 11.30; Mature: 11.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLEKKLKKIAYERIDILMSLAEEEAKKGNWDRAKRYVYLARRIAMKMRIRFPKKWKR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RICKKCGTFLLYGRNARVRIKSKRYPHVVITCLECGAIYRIPMIREKKEKRRKKLEERLK
HHHHHHCCEEEECCCCEEEECCCCCCCHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHH
AKSNSQTS
HCCCCCCC
>Mature Secondary Structure
MKKFLEKKLKKIAYERIDILMSLAEEEAKKGNWDRAKRYVYLARRIAMKMRIRFPKKWKR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RICKKCGTFLLYGRNARVRIKSKRYPHVVITCLECGAIYRIPMIREKKEKRRKKLEERLK
HHHHHHCCEEEECCCCEEEECCCCCCCHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHH
AKSNSQTS
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087