Click here to switch to the map view.

The map label for this gene is ydeM [C]

Identifier: 15669097

GI number: 15669097

Start: 836068

End: 836928

Strand: Reverse

Name: ydeM [C]

Synonym: MJ0907

Alternate gene names: 15669097

Gene position: 836928-836068 (Counterclockwise)

Preceding gene: 15669100

Following gene: 15669080

Centisome position: 50.27

GC content: 25.44

Gene sequence:

>861_bases
TTGGTGGATGGTATGAAACATTTAATATTAAAGGTAACAAACAGATGCAATCTAAATTGTATTTACTGCTATGCAAACAA
CAAAAATAATAAAGATATGGATTTTAAAACAGCTAAAAATGCTATAGATTATTTACTAAACTTAGATAATCAGATAAAAA
TACAATTCACAGGTGGAGAACCACTTTTAAATTTTAATTTAATTGAAAAGATTGTTGATTACTGTAATGATAATTATAGC
AACTGCAATATTCAATATGCCATACAAACTAATGCAACCCTTATAAACGAAAAAATAGCTGAAAAAATTAAAGAACTTGA
CATAAAAGTTGGTATTAGCATAGATGGATTGGAAATAAATGATATCCTAAGACCTTATAAAAATGGAAAGCCATCAACAT
TAGATACTTTAAAGGGTATGTATATCTTAAAATCTTATAATATCCCTTTTGGAATAACAACTGTTGTTACAAATAAAAAT
CTTCCTTATTTAGAAGAATTTGTTAAATATCTAATTGCCTTTGGTGTAAAGAGCATAAGTTTTGATTTATTGAAACCAAA
GAAAAAAGAACATTTAACATTAATGCCAAATATTGAAGAATTTAATAAATTGTTAAATAAATTGGGAAGATATCCCATCT
ACATAAAGAATCTACAAAAAAGGCCAAAAGATAAATATTGCTATTTAAACTCTGGGGATTTACTATTTGTTAATGAATTT
GGGGATATTTATTTATGCCCTACATTGGAAGGACTTTCCTGTTTAGGAAATATAAACGATAAAAATAAAATAAAATTACC
AAAGGTAAAAAGTAAAGGATGTTATGCGAGAGAGTTCTTGATAAAAACATTTAAAAAATAA

Upstream 100 bases:

>100_bases
AGTATCACCAATTATATTAAATAAAATCTTAATTAACTTAACAATATCTTTAGTTTATTATTTAATTTATCATCTTTTTA
TCACTTTTTATAATAAAAAT

Downstream 100 bases:

>100_bases
TGAAGTTATTTAAATCTTTTCAATAACTAAAATTCCATTTCCTAAGCTTTCAATTTTGAAATCATATCCTAATGATTCAA
GAATATCGACTATATCCTTT

Product: chondro-6-sulfatase regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MVDGMKHLILKVTNRCNLNCIYCYANNKNNKDMDFKTAKNAIDYLLNLDNQIKIQFTGGEPLLNFNLIEKIVDYCNDNYS
NCNIQYAIQTNATLINEKIAEKIKELDIKVGISIDGLEINDILRPYKNGKPSTLDTLKGMYILKSYNIPFGITTVVTNKN
LPYLEEFVKYLIAFGVKSISFDLLKPKKKEHLTLMPNIEEFNKLLNKLGRYPIYIKNLQKRPKDKYCYLNSGDLLFVNEF
GDIYLCPTLEGLSCLGNINDKNKIKLPKVKSKGCYAREFLIKTFKK

Sequences:

>Translated_286_residues
MVDGMKHLILKVTNRCNLNCIYCYANNKNNKDMDFKTAKNAIDYLLNLDNQIKIQFTGGEPLLNFNLIEKIVDYCNDNYS
NCNIQYAIQTNATLINEKIAEKIKELDIKVGISIDGLEINDILRPYKNGKPSTLDTLKGMYILKSYNIPFGITTVVTNKN
LPYLEEFVKYLIAFGVKSISFDLLKPKKKEHLTLMPNIEEFNKLLNKLGRYPIYIKNLQKRPKDKYCYLNSGDLLFVNEF
GDIYLCPTLEGLSCLGNINDKNKIKLPKVKSKGCYAREFLIKTFKK
>Mature_286_residues
MVDGMKHLILKVTNRCNLNCIYCYANNKNNKDMDFKTAKNAIDYLLNLDNQIKIQFTGGEPLLNFNLIEKIVDYCNDNYS
NCNIQYAIQTNATLINEKIAEKIKELDIKVGISIDGLEINDILRPYKNGKPSTLDTLKGMYILKSYNIPFGITTVVTNKN
LPYLEEFVKYLIAFGVKSISFDLLKPKKKEHLTLMPNIEEFNKLLNKLGRYPIYIKNLQKRPKDKYCYLNSGDLLFVNEF
GDIYLCPTLEGLSCLGNINDKNKIKLPKVKSKGCYAREFLIKTFKK

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family

Homologues:

Organism=Escherichia coli, GI87081923, Length=203, Percent_Identity=32.0197044334975, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y907_METJA (Q58317)

Other databases:

- EMBL:   L77117
- PIR:   C64413
- RefSeq:   NP_247902.1
- ProteinModelPortal:   Q58317
- GeneID:   1451796
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0907
- NMPDR:   fig|243232.1.peg.939
- TIGR:   MJ0907
- HOGENOM:   HBG539146
- OMA:   CYAREFL
- ProtClustDB:   CLSK796644
- BioCyc:   MJAN243232:MJ_0907-MONOMER
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197
- SMART:   SM00729

Pfam domain/function: PF04055 Radical_SAM

EC number: NA

Molecular weight: Translated: 32947; Mature: 32947

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDGMKHLILKVTNRCNLNCIYCYANNKNNKDMDFKTAKNAIDYLLNLDNQIKIQFTGGE
CCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCC
PLLNFNLIEKIVDYCNDNYSNCNIQYAIQTNATLINEKIAEKIKELDIKVGISIDGLEIN
CEECHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCEEHH
DILRPYKNGKPSTLDTLKGMYILKSYNIPFGITTVVTNKNLPYLEEFVKYLIAFGVKSIS
HHHHHCCCCCCCHHHHHCCEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCHHHHH
FDLLKPKKKEHLTLMPNIEEFNKLLNKLGRYPIYIKNLQKRPKDKYCYLNSGDLLFVNEF
HHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCEEEECHHCCCCCCEEEECCCCEEEEECC
GDIYLCPTLEGLSCLGNINDKNKIKLPKVKSKGCYAREFLIKTFKK
CCEEECCCCCCHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MVDGMKHLILKVTNRCNLNCIYCYANNKNNKDMDFKTAKNAIDYLLNLDNQIKIQFTGGE
CCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCC
PLLNFNLIEKIVDYCNDNYSNCNIQYAIQTNATLINEKIAEKIKELDIKVGISIDGLEIN
CEECHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCEEHH
DILRPYKNGKPSTLDTLKGMYILKSYNIPFGITTVVTNKNLPYLEEFVKYLIAFGVKSIS
HHHHHCCCCCCCHHHHHCCEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCHHHHH
FDLLKPKKKEHLTLMPNIEEFNKLLNKLGRYPIYIKNLQKRPKDKYCYLNSGDLLFVNEF
HHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCEEEECHHCCCCCCEEEECCCCEEEEECC
GDIYLCPTLEGLSCLGNINDKNKIKLPKVKSKGCYAREFLIKTFKK
CCEEECCCCCCHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087