Click here to switch to the map view.

The map label for this gene is psd

Identifier: 15669004

GI number: 15669004

Start: 740498

End: 741118

Strand: Reverse

Name: psd

Synonym: MJ0817

Alternate gene names: 15669004

Gene position: 741118-740498 (Counterclockwise)

Preceding gene: 15669005

Following gene: 15669003

Centisome position: 44.51

GC content: 33.33

Gene sequence:

>621_bases
ATGGGAAAATATAAAAAATTCTTCGCCATAGCTGTTTGTTCTCTACTGTTATTTACTGTTTATTTTTATAGAGACCCAGA
TAGAGTAATAACAAAAGGAAATAACATAATTTTATCTCCAGCTGATGGGACTGTTGAATATATAAAATTCTACGAAAATG
GAAATCCAGAGGTTTTTAAAGATGGGAATTGTTATGTTTTAAATGTTTCAAGATACTTCCCAAACGGATGCTATGTTGTT
GGTATCTTCATGTCTCCGTTGGATGTGCATGTTAATAGAGCTCCGATAGGTGGGAGGATAGTATATATAAAACATATTGA
TGGTAGTTTTTACCCTGCATTCTTAGAAGGTGTGGAGAAGATAAATGAGAGAAATATAGTGATTATAAAAAATGGTTCTG
AATATGTTGGAGTGGTTCAAATAGCCGGATTTGTTGCAAGGAGATGCTGGTTAAGCATAAAAGAGGGAGAATGTATTAAT
ATGGGGCAAAAAATAGGAATGATAAAACTTGGTTCTCAAACAGCAGTAATAATCCCAGCCAACTACAATATAACAGTTAA
AGTAGGAGAGAGGGTGTATGCAGGACAAACAATTATTGCAGTTAAAAGAACAGATAATTAA

Upstream 100 bases:

>100_bases
GATTAAAAGAGGAAAATATAATATATTTTTATTCTGAAGATGATGCAAAGGCACTTGGTTATGAAAAATGTAAGTGGTGT
GAAGAACATGGTGGTTAATT

Downstream 100 bases:

>100_bases
TGATATTAAAAAAAGAGTTTTAAAGATTAGAGAAGATTTAGGACTGAAGAAGGTAGAGTTTGATATTGTAGATATTGAGA
TAGAAGGGAAAGTTTTAATT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MGKYKKFFAIAVCSLLLFTVYFYRDPDRVITKGNNIILSPADGTVEYIKFYENGNPEVFKDGNCYVLNVSRYFPNGCYVV
GIFMSPLDVHVNRAPIGGRIVYIKHIDGSFYPAFLEGVEKINERNIVIIKNGSEYVGVVQIAGFVARRCWLSIKEGECIN
MGQKIGMIKLGSQTAVIIPANYNITVKVGERVYAGQTIIAVKRTDN

Sequences:

>Translated_206_residues
MGKYKKFFAIAVCSLLLFTVYFYRDPDRVITKGNNIILSPADGTVEYIKFYENGNPEVFKDGNCYVLNVSRYFPNGCYVV
GIFMSPLDVHVNRAPIGGRIVYIKHIDGSFYPAFLEGVEKINERNIVIIKNGSEYVGVVQIAGFVARRCWLSIKEGECIN
MGQKIGMIKLGSQTAVIIPANYNITVKVGERVYAGQTIIAVKRTDN
>Mature_205_residues
GKYKKFFAIAVCSLLLFTVYFYRDPDRVITKGNNIILSPADGTVEYIKFYENGNPEVFKDGNCYVLNVSRYFPNGCYVVG
IFMSPLDVHVNRAPIGGRIVYIKHIDGSFYPAFLEGVEKINERNIVIIKNGSEYVGVVQIAGFVARRCWLSIKEGECINM
GQKIGMIKLGSQTAVIIPANYNITVKVGERVYAGQTIIAVKRTDN

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_METJA (Q58227)

Other databases:

- EMBL:   L77117
- PIR:   A64402
- RefSeq:   NP_247808.1
- ProteinModelPortal:   Q58227
- GeneID:   1451700
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0817
- NMPDR:   fig|243232.1.peg.845
- TIGR:   MJ0817
- HOGENOM:   HBG541103
- OMA:   ESENNER
- ProtClustDB:   PRK05305
- BioCyc:   MJAN243232:MJ_0817-MONOMER
- BRENDA:   4.1.1.65
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23055; Mature: 22924

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKYKKFFAIAVCSLLLFTVYFYRDPDRVITKGNNIILSPADGTVEYIKFYENGNPEVFK
CCCHHHHHHHHHHHHHHHHHHEEECCCCEEECCCEEEEECCCCCEEEEEEEECCCCCEEE
DGNCYVLNVSRYFPNGCYVVGIFMSPLDVHVNRAPIGGRIVYIKHIDGSFYPAFLEGVEK
CCCEEEEEEHHHCCCCCEEEEEEECCEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHH
INERNIVIIKNGSEYVGVVQIAGFVARRCWLSIKEGECINMGQKIGMIKLGSQTAVIIPA
HCCCCEEEEECCCCEEEHHHHHHHHHHHHEEEECCCCEECCCCEECEEEECCCEEEEEEC
NYNITVKVGERVYAGQTIIAVKRTDN
CCEEEEEECCEEECCCEEEEEEECCC
>Mature Secondary Structure 
GKYKKFFAIAVCSLLLFTVYFYRDPDRVITKGNNIILSPADGTVEYIKFYENGNPEVFK
CCHHHHHHHHHHHHHHHHHHEEECCCCEEECCCEEEEECCCCCEEEEEEEECCCCCEEE
DGNCYVLNVSRYFPNGCYVVGIFMSPLDVHVNRAPIGGRIVYIKHIDGSFYPAFLEGVEK
CCCEEEEEEHHHCCCCCEEEEEEECCEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHH
INERNIVIIKNGSEYVGVVQIAGFVARRCWLSIKEGECINMGQKIGMIKLGSQTAVIIPA
HCCCCEEEEECCCCEEEHHHHHHHHHHHHEEEECCCCEECCCCEECEEEECCCEEEEEEC
NYNITVKVGERVYAGQTIIAVKRTDN
CCEEEEEECCEEECCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087