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The map label for this gene is rpl40e

Identifier: 15668889

GI number: 15668889

Start: 634128

End: 634271

Strand: Reverse

Name: rpl40e

Synonym: MJ0707

Alternate gene names: 15668889

Gene position: 634271-634128 (Counterclockwise)

Preceding gene: 15668890

Following gene: 15668880

Centisome position: 38.1

GC content: 34.03

Gene sequence:

>144_bases
ATGCCATTTGAAGAAGCAATGAAAAGGTTATTTATGAAAAAGATTTGTATGAGATGTAATGCAAGAAACCCTTGGAGAGC
TACAAAGTGTAGAAAGTGTGGATACAAAGGTTTAAGACCAAAAGCAAAAGAACCAAGAGGATAA

Upstream 100 bases:

>100_bases
AAAATATATAACTAAAATTTAAATCTGTCAAAAAACATAAAAACATATAAAAAGTTTTAAAAAGTTTTAATATGTTTATT
AAAAATCTGTAGGTGAGAGA

Downstream 100 bases:

>100_bases
GCGAGCTACTTTTTGTTTATTCTTTTTTATATCTTAAAACTCAATTAAGAAAACATGATTTTGGCTATTTTAAAGGTTAT
AGTCCCTTCAACAATTCCAG

Product: 50S ribosomal protein L40e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 47; Mature: 46

Protein sequence:

>47_residues
MPFEEAMKRLFMKKICMRCNARNPWRATKCRKCGYKGLRPKAKEPRG

Sequences:

>Translated_47_residues
MPFEEAMKRLFMKKICMRCNARNPWRATKCRKCGYKGLRPKAKEPRG
>Mature_46_residues
PFEEAMKRLFMKKICMRCNARNPWRATKCRKCGYKGLRPKAKEPRG

Specific function: Unknown

COG id: COG1552

COG function: function code J; Ribosomal protein L40E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L40e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL40_METJA (P54058)

Other databases:

- EMBL:   L77117
- PIR:   C64388
- RefSeq:   NP_247692.1
- ProteinModelPortal:   P54058
- SMR:   P54058
- GeneID:   1451575
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0707
- NMPDR:   fig|243232.1.peg.729
- TIGR:   MJ0707
- HOGENOM:   HBG391745
- ProtClustDB:   PRK04136
- BioCyc:   MJAN243232:MJ_0707-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00788
- InterPro:   IPR001975

Pfam domain/function: PF01020 Ribosomal_L40e

EC number: NA

Molecular weight: Translated: 5618; Mature: 5487

Theoretical pI: Translated: 11.21; Mature: 11.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.5 %Cys     (Translated Protein)
8.5 %Met     (Translated Protein)
17.0 %Cys+Met (Translated Protein)
8.7 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
15.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFEEAMKRLFMKKICMRCNARNPWRATKCRKCGYKGLRPKAKEPRG
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PFEEAMKRLFMKKICMRCNARNPWRATKCRKCGYKGLRPKAKEPRG
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087