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The map label for this gene is rps4e

Identifier: 15668645

GI number: 15668645

Start: 414309

End: 415043

Strand: Direct

Name: rps4e

Synonym: MJ0468

Alternate gene names: 15668645

Gene position: 414309-415043 (Clockwise)

Preceding gene: 15668644

Following gene: 15668646

Centisome position: 24.88

GC content: 33.61

Gene sequence:

>735_bases
ATGGCAAAAAAAGGTCCAAAAAGACATTTAAAAAGATTGGCAGCTCCAGTTAGATGGGAGTTACCAAGAAAGATTCACAA
ATTCACAGTTAGACCATTACCAGGAGCACACCCAATGAGTGAGTCATTACCATTACTGTTAATCGTTAGAGACATTTTAA
AGTATGCCGATAACGCAAGAGAAGCAAAGAAAATCATTAAAATGGGTAAAGTTTTAGTTGATGGAAGAGTTAGGAAGGAA
GAAAAGCTTCCAGTTGGATTAATGGATGTTGTCTCATTACCAGATGCAAATGAAAATTACAGAGTTTTATTTGATAGAAA
GGGAAGAATTAAATTAAAACCAACAGAAAATCCAGATGTAAAATTATGTAAAATTAAAAACAAGACTGTTATTAAAGGAG
GACACATACAGCTCAATTTACACGATGGAAGAAATATCGTTATAAAAGTTTCAGACCCTACAAAGGCAGAAGAAGATGTC
TATAAAACAGGAGACACATTATTAATCTCAATCCCTGAACAAGAAATTAAAGCTCATATACCATTTGAAGTTGGTAAATT
AGCATACATTACAGGAGGAAAACACGTCGGTGATTTCGCTAAAATCGTTGAGATTGAGAGAAGAGGAATATATCCTGATA
TCGTTACATTAGAAAACATGGATGGAGAGAAGTTCAAAACAGTTAAAGACTATGTCTTCGTTGTTGGAGACGAAGAGCCA
ATAATTAAATTATAA

Upstream 100 bases:

>100_bases
AGTTCCATATCCAATCCATCCATCAAATGTTATGATTATCAAGTTGTATGACAAGGATGAAAAAAGATTCAAACATATCA
AAAATGAATAAGGTGAAAGG

Downstream 100 bases:

>100_bases
ATTAGATAGATGAGGGAGAAACATGAGCTTTGAAGAGTTATGGCAGAAGAATCCAATGCTAAAACCAAGAATTGAAAAAG
TTGTTGTCAATTTCGGAGTA

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MAKKGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKE
EKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKPTENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDV
YKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVVGDEEP
IIKL

Sequences:

>Translated_244_residues
MAKKGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKE
EKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKPTENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDV
YKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVVGDEEP
IIKL
>Mature_243_residues
AKKGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEE
KLPVGLMDVVSLPDANENYRVLFDRKGRIKLKPTENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVY
KTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVVGDEEPI
IKL

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI4506725, Length=245, Percent_Identity=36.3265306122449, Blast_Score=144, Evalue=7e-35,
Organism=Homo sapiens, GI4506727, Length=244, Percent_Identity=36.0655737704918, Blast_Score=142, Evalue=3e-34,
Organism=Homo sapiens, GI88703062, Length=244, Percent_Identity=33.6065573770492, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17543386, Length=236, Percent_Identity=43.2203389830509, Blast_Score=169, Evalue=1e-42,
Organism=Saccharomyces cerevisiae, GI6322605, Length=244, Percent_Identity=39.344262295082, Blast_Score=154, Evalue=9e-39,
Organism=Saccharomyces cerevisiae, GI6321997, Length=244, Percent_Identity=39.344262295082, Blast_Score=154, Evalue=9e-39,
Organism=Drosophila melanogaster, GI24663672, Length=244, Percent_Identity=38.1147540983607, Blast_Score=147, Evalue=6e-36,
Organism=Drosophila melanogaster, GI24663668, Length=244, Percent_Identity=38.1147540983607, Blast_Score=147, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4E_METJA (P54039)

Other databases:

- EMBL:   L77117
- PIR:   D64358
- RefSeq:   NP_247443.1
- ProteinModelPortal:   P54039
- GeneID:   1451330
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0468
- NMPDR:   fig|243232.1.peg.480
- TIGR:   MJ0468
- HOGENOM:   HBG392118
- OMA:   QLNLHDG
- ProtClustDB:   PRK04313
- BioCyc:   MJAN243232:MJ_0468-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00485
- InterPro:   IPR005824
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR018199
- InterPro:   IPR002942
- PANTHER:   PTHR11581
- PIRSF:   PIRSF002116
- ProDom:   PD002667
- SMART:   SM00739
- SMART:   SM00363

Pfam domain/function: PF00467 KOW; PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4

EC number: NA

Molecular weight: Translated: 27659; Mature: 27528

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00528 RIBOSOMAL_S4E; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAR
CCCCCHHHHHHHHCCCCCHHCCHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
EAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKPTENPDV
HHHHHHHHHHEEECCCCCCCCCCCCCHHHHEECCCCCCCEEEEEECCCEEEECCCCCCCE
KLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHI
EEEEECCCEEEECCEEEEEEECCCEEEEEECCCCCCHHHHHHCCCEEEEECCHHHCEEEC
PFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVVGDEEP
CEECCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHEEEEEEEEEECCCCC
IIKL
CEEC
>Mature Secondary Structure 
AKKGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAR
CCCCHHHHHHHHCCCCCHHCCHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
EAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKPTENPDV
HHHHHHHHHHEEECCCCCCCCCCCCCHHHHEECCCCCCCEEEEEECCCEEEECCCCCCCE
KLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHI
EEEEECCCEEEECCEEEEEEECCCEEEEEECCCCCCHHHHHHCCCEEEEECCHHHCEEEC
PFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVVGDEEP
CEECCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHEEEEEEEEEECCCCC
IIKL
CEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087