Click here to switch to the map view.

The map label for this gene is ygcB [C]

Identifier: 15668559

GI number: 15668559

Start: 347674

End: 349518

Strand: Direct

Name: ygcB [C]

Synonym: MJ0383

Alternate gene names: 15668559

Gene position: 347674-349518 (Clockwise)

Preceding gene: 15668558

Following gene: 15668560

Centisome position: 20.88

GC content: 31.65

Gene sequence:

>1845_bases
ATGGATATAATTAATTTTTTTAAACAAATTACAGATCATGAGCCTTATGATTATCAAATTAGGGCATGGGAAAAGATTAA
TAAAATTATGGAACTTGGGGGGAGGGTAGTAATAGAGATACCAACTGCTGGTGGAAAAACAGAAGCAGCAATTATTCCCT
ACTTATATCAATTCATCTCCAACGATTGGAAAGTTCCAAGATTAATCTATGTTCTTCCGACACGTTCACTTGTTGAAAAA
CAGGTAGAAAGAATCAGGAATTATATTAAAAAAATTCTTGAAATAAAAGGATATTCAAAGGATAAAGTTGAGGAATTAGC
TAAAAAAATAGTTCAAGTTGAGTATGGATTAGAGGAAACCCATGCTTTCTTAGGGTTTGTTGTTTTAACTACTTGGGATA
CATTTCTTTATGGGTTAGCAGCCCATAGGACTGTTGGAGATAGATTTACCTTCCCATGTGGGGCAATTGCTCAAAGTTTA
GTAGTTTTTGATGAAATACAGATGTATCAGGATGAAAGCCTTTACATGCCGAGATTGATTGGATTGGTAGTTAAAAGATT
GGTAGAAGCTAACGTTCCATTAGTCTTTATGACAGCGACACTTCCAACAGAGCTTAAAAAAATACTTGGCATACACGATG
AAGAACCAATAACCGTTAATCCAGAAGATACGAAAAAACCAGAGAGAGGAGAAGTAGTTGTTGAATTTAAGGAAAAATTA
AGTGACGAAGAACTTAGTAATGAAATCAAAAAAGCAATAAATGAAGGAAAAAAGGTGTTGATAATAAAAAACACTGTAAA
CAGTGCCATAGAGGTTTATGAAAAAGTAAAGCAACTTGGAAATTCATTACTCCTACACTCAAGATTTACAGTAGAAGATA
GAGCAGAAAAAGAGAAAGACATTGATAAAGCCGAGATAATTGTTGCTACACAGGTGGTTGAAGCAGGTTTGGATTTGACA
AATGTAGGGCTTGTAATAACTGATTTAGCTCCATTAGATGCATTAATACAAAGAATAGGAAGATGTGCAAGAAGAAAAGG
AGAAAGAGGCAAAGTAATAGTTGTATTGCCAAATTTTAATGAGAAAATAAATGAAGACCATAGGGAAAAAGTAATTTTAG
GATTTAAAAATATCCCATTTGAAAATGCCTATGTAACACTGGTAAATAACAAAGATTATGGGAGAGTTATTGAATTAACT
ATTGAAACAATTGAAGAGAAAAAAGGAAAGAGCAAAATCGTCCCTAAAAAGTTTTACATCGGTGATTTGGGAAACAAGAC
AATAAGAAAGCTTATTGAAAATAACAAAATTCTGAAGAAAAAAGATCTATACTTTATTCCATATTCAACACAGCCCTATG
ATCCATTAATTATGATAAAAAGCTTTGATGAAGTTGAAAGTGTTAGTGAATATTTATACGACATAATTAAAGCTCGTGAG
GCTTTAGATAGGGTTTATAAGGAATATTATGAAAACAACATAGTCCCTAAAGACTATTACTCTGCCTACATATATTTCAG
AGAGTTAAAACTCTTTTCTACACCTCCAGAATATGAACTCAAGGCAAGACCAGAAATGTTTGCAATATTGTATCCATTAG
AAAATGCTGAAGAAAAAGTAAAAAATAAAGAAATAATTGAGTTTAATCCAAAATATGTTATTCGTGTGAGCTATAACTGG
CTTAAAAACAAGTGGGAGAAGTTTGATAAAAAATTTGAGTTAATTAAAGAATACGATGAGAAAGGTTGGATATGTAGTCT
TAAAAAAGCTGGAAAACTACAACCTTACAAAATCTACATAATTGATGACAAATATTACTCTAAAGAAACTGGGATAATAA
TTTAA

Upstream 100 bases:

>100_bases
TTATTGAAAAACGTTATAGAAGAAGCTCATATTACGTTGAATCAGATAGAATTTTTGACGGAAATTACAAAATTATTGCC
TTTGATGAGGTGATTGGGTT

Downstream 100 bases:

>100_bases
CAAACTTTGATTTTGGGTGAGATTATGGAAGTTTTAGCCTTTAAAAATCAATCCCTTATTGATCATGTTAACGATATGGT
CAAATATTGGGAGAGAATAA

Product: ATP-dependent RNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MDIINFFKQITDHEPYDYQIRAWEKINKIMELGGRVVIEIPTAGGKTEAAIIPYLYQFISNDWKVPRLIYVLPTRSLVEK
QVERIRNYIKKILEIKGYSKDKVEELAKKIVQVEYGLEETHAFLGFVVLTTWDTFLYGLAAHRTVGDRFTFPCGAIAQSL
VVFDEIQMYQDESLYMPRLIGLVVKRLVEANVPLVFMTATLPTELKKILGIHDEEPITVNPEDTKKPERGEVVVEFKEKL
SDEELSNEIKKAINEGKKVLIIKNTVNSAIEVYEKVKQLGNSLLLHSRFTVEDRAEKEKDIDKAEIIVATQVVEAGLDLT
NVGLVITDLAPLDALIQRIGRCARRKGERGKVIVVLPNFNEKINEDHREKVILGFKNIPFENAYVTLVNNKDYGRVIELT
IETIEEKKGKSKIVPKKFYIGDLGNKTIRKLIENNKILKKKDLYFIPYSTQPYDPLIMIKSFDEVESVSEYLYDIIKARE
ALDRVYKEYYENNIVPKDYYSAYIYFRELKLFSTPPEYELKARPEMFAILYPLENAEEKVKNKEIIEFNPKYVIRVSYNW
LKNKWEKFDKKFELIKEYDEKGWICSLKKAGKLQPYKIYIIDDKYYSKETGIII

Sequences:

>Translated_614_residues
MDIINFFKQITDHEPYDYQIRAWEKINKIMELGGRVVIEIPTAGGKTEAAIIPYLYQFISNDWKVPRLIYVLPTRSLVEK
QVERIRNYIKKILEIKGYSKDKVEELAKKIVQVEYGLEETHAFLGFVVLTTWDTFLYGLAAHRTVGDRFTFPCGAIAQSL
VVFDEIQMYQDESLYMPRLIGLVVKRLVEANVPLVFMTATLPTELKKILGIHDEEPITVNPEDTKKPERGEVVVEFKEKL
SDEELSNEIKKAINEGKKVLIIKNTVNSAIEVYEKVKQLGNSLLLHSRFTVEDRAEKEKDIDKAEIIVATQVVEAGLDLT
NVGLVITDLAPLDALIQRIGRCARRKGERGKVIVVLPNFNEKINEDHREKVILGFKNIPFENAYVTLVNNKDYGRVIELT
IETIEEKKGKSKIVPKKFYIGDLGNKTIRKLIENNKILKKKDLYFIPYSTQPYDPLIMIKSFDEVESVSEYLYDIIKARE
ALDRVYKEYYENNIVPKDYYSAYIYFRELKLFSTPPEYELKARPEMFAILYPLENAEEKVKNKEIIEFNPKYVIRVSYNW
LKNKWEKFDKKFELIKEYDEKGWICSLKKAGKLQPYKIYIIDDKYYSKETGIII
>Mature_614_residues
MDIINFFKQITDHEPYDYQIRAWEKINKIMELGGRVVIEIPTAGGKTEAAIIPYLYQFISNDWKVPRLIYVLPTRSLVEK
QVERIRNYIKKILEIKGYSKDKVEELAKKIVQVEYGLEETHAFLGFVVLTTWDTFLYGLAAHRTVGDRFTFPCGAIAQSL
VVFDEIQMYQDESLYMPRLIGLVVKRLVEANVPLVFMTATLPTELKKILGIHDEEPITVNPEDTKKPERGEVVVEFKEKL
SDEELSNEIKKAINEGKKVLIIKNTVNSAIEVYEKVKQLGNSLLLHSRFTVEDRAEKEKDIDKAEIIVATQVVEAGLDLT
NVGLVITDLAPLDALIQRIGRCARRKGERGKVIVVLPNFNEKINEDHREKVILGFKNIPFENAYVTLVNNKDYGRVIELT
IETIEEKKGKSKIVPKKFYIGDLGNKTIRKLIENNKILKKKDLYFIPYSTQPYDPLIMIKSFDEVESVSEYLYDIIKARE
ALDRVYKEYYENNIVPKDYYSAYIYFRELKLFSTPPEYELKARPEMFAILYPLENAEEKVKNKEIIEFNPKYVIRVSYNW
LKNKWEKFDKKFELIKEYDEKGWICSLKKAGKLQPYKIYIIDDKYYSKETGIII

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain

Homologues:

Organism=Escherichia coli, GI1789119, Length=458, Percent_Identity=25.9825327510917, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y383_METJA (Q57828)

Other databases:

- EMBL:   L77117
- PIR:   G64347
- RefSeq:   NP_247357.1
- ProteinModelPortal:   Q57828
- GeneID:   1451240
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0383
- NMPDR:   fig|243232.1.peg.394
- TIGR:   MJ0383
- HOGENOM:   HBG194068
- OMA:   RIGRCAR
- ProtClustDB:   CLSK213777
- BioCyc:   MJAN243232:MJ_0383-MONOMER
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021
- SMART:   SM00487
- SMART:   SM00490
- TIGRFAMs:   TIGR01587

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C

EC number: NA

Molecular weight: Translated: 71569; Mature: 71569

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS51192 HELICASE_ATP_BIND_1; PS51194 HELICASE_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIINFFKQITDHEPYDYQIRAWEKINKIMELGGRVVIEIPTAGGKTEAAIIPYLYQFIS
CCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHC
NDWKVPRLIYVLPTRSLVEKQVERIRNYIKKILEIKGYSKDKVEELAKKIVQVEYGLEET
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
HAFLGFVVLTTWDTFLYGLAAHRTVGDRFTFPCGAIAQSLVVFDEIQMYQDESLYMPRLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GLVVKRLVEANVPLVFMTATLPTELKKILGIHDEEPITVNPEDTKKPERGEVVVEFKEKL
HHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCEEEEHHHHC
SDEELSNEIKKAINEGKKVLIIKNTVNSAIEVYEKVKQLGNSLLLHSRFTVEDRAEKEKD
CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHC
IDKAEIIVATQVVEAGLDLTNVGLVITDLAPLDALIQRIGRCARRKGERGKVIVVLPNFN
CCHHHHHHHHHHHHHCCCEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
EKINEDHREKVILGFKNIPFENAYVTLVNNKDYGRVIELTIETIEEKKGKSKIVPKKFYI
HHCCCHHHHEEEEEECCCCCCCEEEEEECCCCCCEEEEEEHHHHHHCCCCCCCCCCEEEE
GDLGNKTIRKLIENNKILKKKDLYFIPYSTQPYDPLIMIKSFDEVESVSEYLYDIIKARE
CCCCCHHHHHHHHCCCCEEECCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHH
ALDRVYKEYYENNIVPKDYYSAYIYFRELKLFSTPPEYELKARPEMFAILYPLENAEEKV
HHHHHHHHHHHCCCCCCHHHHHEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHH
KNKEIIEFNPKYVIRVSYNWLKNKWEKFDKKFELIKEYDEKGWICSLKKAGKLQPYKIYI
CCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEE
IDDKYYSKETGIII
ECCCCCCCCCCCCC
>Mature Secondary Structure
MDIINFFKQITDHEPYDYQIRAWEKINKIMELGGRVVIEIPTAGGKTEAAIIPYLYQFIS
CCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHC
NDWKVPRLIYVLPTRSLVEKQVERIRNYIKKILEIKGYSKDKVEELAKKIVQVEYGLEET
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHH
HAFLGFVVLTTWDTFLYGLAAHRTVGDRFTFPCGAIAQSLVVFDEIQMYQDESLYMPRLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GLVVKRLVEANVPLVFMTATLPTELKKILGIHDEEPITVNPEDTKKPERGEVVVEFKEKL
HHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCEEEEHHHHC
SDEELSNEIKKAINEGKKVLIIKNTVNSAIEVYEKVKQLGNSLLLHSRFTVEDRAEKEKD
CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHC
IDKAEIIVATQVVEAGLDLTNVGLVITDLAPLDALIQRIGRCARRKGERGKVIVVLPNFN
CCHHHHHHHHHHHHHCCCEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
EKINEDHREKVILGFKNIPFENAYVTLVNNKDYGRVIELTIETIEEKKGKSKIVPKKFYI
HHCCCHHHHEEEEEECCCCCCCEEEEEECCCCCCEEEEEEHHHHHHCCCCCCCCCCEEEE
GDLGNKTIRKLIENNKILKKKDLYFIPYSTQPYDPLIMIKSFDEVESVSEYLYDIIKARE
CCCCCHHHHHHHHCCCCEEECCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHH
ALDRVYKEYYENNIVPKDYYSAYIYFRELKLFSTPPEYELKARPEMFAILYPLENAEEKV
HHHHHHHHHHHCCCCCCHHHHHEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHH
KNKEIIEFNPKYVIRVSYNWLKNKWEKFDKKFELIKEYDEKGWICSLKKAGKLQPYKIYI
CCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEE
IDDKYYSKETGIII
ECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087