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The map label for this gene is xerD [C]

Identifier: 15668543

GI number: 15668543

Start: 333289

End: 334281

Strand: Direct

Name: xerD [C]

Synonym: MJ0367

Alternate gene names: 15668543

Gene position: 333289-334281 (Clockwise)

Preceding gene: 15668542

Following gene: 15668544

Centisome position: 20.02

GC content: 33.43

Gene sequence:

>993_bases
ATGAGGGAGAAAGAGCTTAAACATATTGAAAATCTTTTACTTTTGAAGGTTAAGAAAGAGAAAATTGAAGAGACAGATAA
AATTAAAGAATATTTAAAAAGGTTTGAAGATGAAAGGAGATTTGATGGGATAAAAGAGAGCACTATAAAGAGTGATTTAG
ACAGGTTGAGAGTGTTTTTAGATTATTGCATTAATTACCTTGGAAAAAATCCAGAAGAGTTAAAAACAAGTGATTTCGTT
AAATTTTTTAATTATTTAGATACGGTTAGAAAAGTATCTAAAAGTTCGCAGAGGAAGTATTTTTTATTATTAAAAGTGTT
TTATAGAGTTTTAAGAATGTATAATGTTATTCAGGAGTTCGTTGAAGAGAGTAAGGATAGGAAGAGGTTCGCGAGAATTG
AAATCCAACATTATGATGCTGTTGATGCTGAAATGTTGAATATGATTTTAAAGAAGATAATTGAAAGTGGGAGTAGGACC
AGGATAAGGGATGCGTTAATAATCAGGTTACTTTGGGACACTGGTTGTAGGGTTTCTGAGGTTCTTAATTTGAAATACAA
GGATTGTGATTTAGACAATGGCATATTTAAGATTCGAAATACCAAAACTCATGAGGAGAGGACTGTTGTTTGTTCATCGG
ATACTTTAGAGTTGCTTAGGAATTATGTTCAGTTTAATGTAAGGCAAGGTTCAGATGACTATTTGTTCCAGAATTCTCAG
GGTGGGAGGGTTAGAAAAGAGTGGATTAGTGAAGTGTTTAGAAAGGCAGTGAATGAATTGAAAGAGGAGGGTAAAATCCC
TAAAAATAGGCGTATTGTTATTCATAGTATAAGACACGGAAGGGCGGTAGATTTATTGAATAAGGGAGTGCCCATCGACA
TCGTAAAGGAATACTTAGGACATAAGTCGATGAACACTACTTTGATTTATGCTCATTCTAAGGAGAGGGCTGAGAGTTTG
GAGTTTATTAAAAAGTTGTTGAGAATCCAGTAA

Upstream 100 bases:

>100_bases
TATAAGAGGTCTATAACTCTCACAGAGGAAGAGGAGGTTATAATACAGAGGTTAGGTAAAAGTGCTAATTTGTTGTTGAA
CTGCGAGTTGGTGAAGTTGG

Downstream 100 bases:

>100_bases
GTTATGGTTGTTGTGGAGTAGTTTGTTTAACTGGATTTGGTGCAGTATAGTAATGCGGTGTTGTTGGAACATTTTTAGGA
TGTAAGTGGTAAATTTTGAG

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MREKELKHIENLLLLKVKKEKIEETDKIKEYLKRFEDERRFDGIKESTIKSDLDRLRVFLDYCINYLGKNPEELKTSDFV
KFFNYLDTVRKVSKSSQRKYFLLLKVFYRVLRMYNVIQEFVEESKDRKRFARIEIQHYDAVDAEMLNMILKKIIESGSRT
RIRDALIIRLLWDTGCRVSEVLNLKYKDCDLDNGIFKIRNTKTHEERTVVCSSDTLELLRNYVQFNVRQGSDDYLFQNSQ
GGRVRKEWISEVFRKAVNELKEEGKIPKNRRIVIHSIRHGRAVDLLNKGVPIDIVKEYLGHKSMNTTLIYAHSKERAESL
EFIKKLLRIQ

Sequences:

>Translated_330_residues
MREKELKHIENLLLLKVKKEKIEETDKIKEYLKRFEDERRFDGIKESTIKSDLDRLRVFLDYCINYLGKNPEELKTSDFV
KFFNYLDTVRKVSKSSQRKYFLLLKVFYRVLRMYNVIQEFVEESKDRKRFARIEIQHYDAVDAEMLNMILKKIIESGSRT
RIRDALIIRLLWDTGCRVSEVLNLKYKDCDLDNGIFKIRNTKTHEERTVVCSSDTLELLRNYVQFNVRQGSDDYLFQNSQ
GGRVRKEWISEVFRKAVNELKEEGKIPKNRRIVIHSIRHGRAVDLLNKGVPIDIVKEYLGHKSMNTTLIYAHSKERAESL
EFIKKLLRIQ
>Mature_330_residues
MREKELKHIENLLLLKVKKEKIEETDKIKEYLKRFEDERRFDGIKESTIKSDLDRLRVFLDYCINYLGKNPEELKTSDFV
KFFNYLDTVRKVSKSSQRKYFLLLKVFYRVLRMYNVIQEFVEESKDRKRFARIEIQHYDAVDAEMLNMILKKIIESGSRT
RIRDALIIRLLWDTGCRVSEVLNLKYKDCDLDNGIFKIRNTKTHEERTVVCSSDTLELLRNYVQFNVRQGSDDYLFQNSQ
GGRVRKEWISEVFRKAVNELKEEGKIPKNRRIVIHSIRHGRAVDLLNKGVPIDIVKEYLGHKSMNTTLIYAHSKERAESL
EFIKKLLRIQ

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

Organism=Escherichia coli, GI1789261, Length=155, Percent_Identity=27.0967741935484, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y367_METJA (Q57813)

Other databases:

- EMBL:   L77117
- PIR:   G64345
- RefSeq:   NP_247341.1
- ProteinModelPortal:   Q57813
- GeneID:   1451224
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0367
- NMPDR:   fig|243232.1.peg.378
- TIGR:   MJ0367
- HOGENOM:   HBG545900
- OMA:   KTHEERT
- ProtClustDB:   CLSK861897
- BioCyc:   MJAN243232:MJ_0367-MONOMER
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 39424; Mature: 39424

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: ACT_SITE 310-310

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREKELKHIENLLLLKVKKEKIEETDKIKEYLKRFEDERRFDGIKESTIKSDLDRLRVFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DYCINYLGKNPEELKTSDFVKFFNYLDTVRKVSKSSQRKYFLLLKVFYRVLRMYNVIQEF
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEESKDRKRFARIEIQHYDAVDAEMLNMILKKIIESGSRTRIRDALIIRLLWDTGCRVSE
HHHHHHHHHHHHHEEHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHH
VLNLKYKDCDLDNGIFKIRNTKTHEERTVVCSSDTLELLRNYVQFNVRQGSDDYLFQNSQ
HHCCCCCCCCCCCCEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCEEECCC
GGRVRKEWISEVFRKAVNELKEEGKIPKNRRIVIHSIRHGRAVDLLNKGVPIDIVKEYLG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHC
HKSMNTTLIYAHSKERAESLEFIKKLLRIQ
CCCCCCEEEEECCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MREKELKHIENLLLLKVKKEKIEETDKIKEYLKRFEDERRFDGIKESTIKSDLDRLRVFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DYCINYLGKNPEELKTSDFVKFFNYLDTVRKVSKSSQRKYFLLLKVFYRVLRMYNVIQEF
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEESKDRKRFARIEIQHYDAVDAEMLNMILKKIIESGSRTRIRDALIIRLLWDTGCRVSE
HHHHHHHHHHHHHEEHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHH
VLNLKYKDCDLDNGIFKIRNTKTHEERTVVCSSDTLELLRNYVQFNVRQGSDDYLFQNSQ
HHCCCCCCCCCCCCEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCEEECCC
GGRVRKEWISEVFRKAVNELKEEGKIPKNRRIVIHSIRHGRAVDLLNKGVPIDIVKEYLG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHHHHHC
HKSMNTTLIYAHSKERAESLEFIKKLLRIQ
CCCCCCEEEEECCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087