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The map label for this gene is fdhD

Identifier: 15668470

GI number: 15668470

Start: 279051

End: 279734

Strand: Reverse

Name: fdhD

Synonym: MJ0295

Alternate gene names: 15668470

Gene position: 279734-279051 (Counterclockwise)

Preceding gene: 15668472

Following gene: 15668469

Centisome position: 16.8

GC content: 27.49

Gene sequence:

>684_bases
ATGATTAAAAAGGTGAAGATAAAAAAGTTTAATGGCAGAGATTTTTATGATATGGAAGATTACGTGGCTGTTGAAGAAAG
CTATAACATTTTTATCAATGGAGAGTTTGTTAAATCTTTATCTATGTCACCAAATTTTTTAAATGAGTTTGCAGTTGGCT
TTGCCATAAGTGAAGGGTTTTTAAACAAAATTGATAAAGTTGAAGTTGATAAAAACAACATAAACATCTTTGGAGAAAAG
AATGATAGAGAGATTAAAAATAATAAAAATAATAAAGAAATAAAAATAGACATTGAAATCATTAAAAAGATAATTTCTTA
TGAAATAAAAGCTAAATATTGGGAAATAACTGGAAGTTTTCACTGGGCTTCAATGTTTGATTTAAAAGGCAATAGTATAA
TTTTTGTTGAGGATATTGGGAGACATAATGCTGTTGATAAAGTTATTGGTTATGCAATATTAAACAATTACAACTTAAAT
AAGTTAATATTGAGATATAGCGGAAGAATTCCATCTGATATTGTTAAAAAAGCTATAAACAGTGGTTTAAATATTATTAT
CTCAAAATCCCCACCAACAGATAAAGCCATAGAATTGGCAGAGGAAAATAACATCCTATTAATTGGCTTTGCAAGAAATG
GGAAATTTAACATTTACACAAGTGGGAGATTATGGGAAGAGTAG

Upstream 100 bases:

>100_bases
ATTAAAATCCCTTCATATAGGAGTTTTATCATAATTTCACCAATTAAAATTTTAAATAGAAATTTAAACATGCTAATATA
TATCAATTAAGGGGTTTATT

Downstream 100 bases:

>100_bases
AGTATTTAAAAAAAGAGTATTCTGATGAGGAAATCTATGAAATCTTAGAGAAACCAGTAAAAGAATGGTTTAAAAGAAAG
TATAAAACCTTTACTCCACC

Product: formate dehydrogenase FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MIKKVKIKKFNGRDFYDMEDYVAVEESYNIFINGEFVKSLSMSPNFLNEFAVGFAISEGFLNKIDKVEVDKNNINIFGEK
NDREIKNNKNNKEIKIDIEIIKKIISYEIKAKYWEITGSFHWASMFDLKGNSIIFVEDIGRHNAVDKVIGYAILNNYNLN
KLILRYSGRIPSDIVKKAINSGLNIIISKSPPTDKAIELAEENNILLIGFARNGKFNIYTSGRLWEE

Sequences:

>Translated_227_residues
MIKKVKIKKFNGRDFYDMEDYVAVEESYNIFINGEFVKSLSMSPNFLNEFAVGFAISEGFLNKIDKVEVDKNNINIFGEK
NDREIKNNKNNKEIKIDIEIIKKIISYEIKAKYWEITGSFHWASMFDLKGNSIIFVEDIGRHNAVDKVIGYAILNNYNLN
KLILRYSGRIPSDIVKKAINSGLNIIISKSPPTDKAIELAEENNILLIGFARNGKFNIYTSGRLWEE
>Mature_227_residues
MIKKVKIKKFNGRDFYDMEDYVAVEESYNIFINGEFVKSLSMSPNFLNEFAVGFAISEGFLNKIDKVEVDKNNINIFGEK
NDREIKNNKNNKEIKIDIEIIKKIISYEIKAKYWEITGSFHWASMFDLKGNSIIFVEDIGRHNAVDKVIGYAILNNYNLN
KLILRYSGRIPSDIVKKAINSGLNIIISKSPPTDKAIELAEENNILLIGFARNGKFNIYTSGRLWEE

Specific function: Necessary for formate dehydrogenase activity

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family

Homologues:

Organism=Escherichia coli, GI1790329, Length=236, Percent_Identity=23.3050847457627, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FDHD_METJA (Q57743)

Other databases:

- EMBL:   L77117
- PIR:   H64336
- RefSeq:   NP_247268.1
- ProteinModelPortal:   Q57743
- SMR:   Q57743
- GeneID:   1451150
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0295
- NMPDR:   fig|243232.1.peg.305
- TIGR:   MJ0295
- HOGENOM:   HBG732883
- OMA:   IFVEDIG
- ProtClustDB:   CLSK2749868
- BioCyc:   MJAN243232:MJ_0295-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00187
- InterPro:   IPR003786
- TIGRFAMs:   TIGR00129

Pfam domain/function: PF02634 FdhD-NarQ

EC number: NA

Molecular weight: Translated: 26119; Mature: 26119

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKVKIKKFNGRDFYDMEDYVAVEESYNIFINGEFVKSLSMSPNFLNEFAVGFAISEGF
CCCEEEEEEECCCCCCCCCCEEEEECCCEEEEECCEEEECCCCCHHHHHHHHHEEEHHHH
LNKIDKVEVDKNNINIFGEKNDREIKNNKNNKEIKIDIEIIKKIISYEIKAKYWEITGSF
HCCCCEEEECCCCEEEEECCCCCHHHCCCCCCEEEEEHHHHHHHHHHEEEEEEEEEECCE
HWASMFDLKGNSIIFVEDIGRHNAVDKVIGYAILNNYNLNKLILRYSGRIPSDIVKKAIN
EEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHC
SGLNIIISKSPPTDKAIELAEENNILLIGFARNGKFNIYTSGRLWEE
CCCEEEEECCCCCCHHEEEECCCCEEEEEEECCCEEEEEECCCCCCC
>Mature Secondary Structure
MIKKVKIKKFNGRDFYDMEDYVAVEESYNIFINGEFVKSLSMSPNFLNEFAVGFAISEGF
CCCEEEEEEECCCCCCCCCCEEEEECCCEEEEECCEEEECCCCCHHHHHHHHHEEEHHHH
LNKIDKVEVDKNNINIFGEKNDREIKNNKNNKEIKIDIEIIKKIISYEIKAKYWEITGSF
HCCCCEEEECCCCEEEEECCCCCHHHCCCCCCEEEEEHHHHHHHHHHEEEEEEEEEECCE
HWASMFDLKGNSIIFVEDIGRHNAVDKVIGYAILNNYNLNKLILRYSGRIPSDIVKKAIN
EEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHC
SGLNIIISKSPPTDKAIELAEENNILLIGFARNGKFNIYTSGRLWEE
CCCEEEEECCCCCCHHEEEECCCCEEEEEEECCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087