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The map label for this gene is mrtD

Identifier: 15668290

GI number: 15668290

Start: 115194

End: 115697

Strand: Direct

Name: mrtD

Synonym: MJ0118

Alternate gene names: 15668290

Gene position: 115194-115697 (Clockwise)

Preceding gene: 15668285

Following gene: 15668300

Centisome position: 6.92

GC content: 32.34

Gene sequence:

>504_bases
ATGAAAAATGAGGTGAAATTTATGAGTGAAGTGATAAAGGTTGTTGATGTAAAAATATTTCCACACAGATATTTGAAGGC
AGAAACTACAGAGAAGGTATTAAATGAGATTTATGATTTGGATGGAATTGTTAGGGTTATAGTTCATGGACAACCCTTGC
CAAAAACTGTTCCATTTGGTCCTGCAAGAGGATTGCCTGTAAATCACCAAGATAGAAAAGTTATTAAGGTTAAAGGCGAA
GAAATGGAATTGAGAGTTAAAGTTGGAGAGATAATTATAACAGTTGAAGGAGAAAAACTTGAAAAGATAATGGATGGAAT
AGAAGAGATATGTAAAAGAAACTTCCCATTTGGATATGATATCTATGTAGGTGCATTTACTAAAATAAAGCCAACTGTAA
CTGATTATATGAAGTATGGAGATATTAGCAGTATAGACCCAAGATTGATTGGCATGGTAGATGCATCAGCAAGATTAAAA
GATTCTGTAAAGATGATAAAATAA

Upstream 100 bases:

>100_bases
TATTTATGAATTTAGATAATAAAATTTAAATTTTTAATTTTCTTAAAGTAATATTAAATTTATCGAAAGTATTATAAAGG
TTGAAAGAAATAGTAGAGTT

Downstream 100 bases:

>100_bases
ATAATTAAAAAAATATTTTTTATTTTTAAAATACTTTCAAATCAATACCTTCTATATAAACTCTTTTTCCCTCAACTTGC
ACTACTACTCCAGAATGAAC

Product: methyl coenzyme M reductase II protein MtrD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MKNEVKFMSEVIKVVDVKIFPHRYLKAETTEKVLNEIYDLDGIVRVIVHGQPLPKTVPFGPARGLPVNHQDRKVIKVKGE
EMELRVKVGEIIITVEGEKLEKIMDGIEEICKRNFPFGYDIYVGAFTKIKPTVTDYMKYGDISSIDPRLIGMVDASARLK
DSVKMIK

Sequences:

>Translated_167_residues
MKNEVKFMSEVIKVVDVKIFPHRYLKAETTEKVLNEIYDLDGIVRVIVHGQPLPKTVPFGPARGLPVNHQDRKVIKVKGE
EMELRVKVGEIIITVEGEKLEKIMDGIEEICKRNFPFGYDIYVGAFTKIKPTVTDYMKYGDISSIDPRLIGMVDASARLK
DSVKMIK
>Mature_167_residues
MKNEVKFMSEVIKVVDVKIFPHRYLKAETTEKVLNEIYDLDGIVRVIVHGQPLPKTVPFGPARGLPVNHQDRKVIKVKGE
EMELRVKVGEIIITVEGEKLEKIMDGIEEICKRNFPFGYDIYVGAFTKIKPTVTDYMKYGDISSIDPRLIGMVDASARLK
DSVKMIK

Specific function: Unknown

COG id: COG4055

COG function: function code H; Methyl coenzyme M reductase, subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MCRW_METJA (Q57582)

Other databases:

- EMBL:   L77117
- PIR:   F64314
- RefSeq:   NP_247083.1
- ProteinModelPortal:   Q57582
- GeneID:   1450961
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0118
- NMPDR:   fig|243232.1.peg.120
- TIGR:   MJ0118
- HOGENOM:   HBG732741
- OMA:   FGPARGL
- ProtClustDB:   CLSK2517552
- BioCyc:   MJAN243232:MJ_0118-MONOMER
- GO:   GO:0015948
- InterPro:   IPR003901
- PIRSF:   PIRSF005636
- ProDom:   PD005228
- TIGRFAMs:   TIGR03260

Pfam domain/function: PF02505 MCR_D

EC number: NA

Molecular weight: Translated: 19008; Mature: 19008

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNEVKFMSEVIKVVDVKIFPHRYLKAETTEKVLNEIYDLDGIVRVIVHGQPLPKTVPFG
CCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCHHHHEEHEECCCCCCCCCCCC
PARGLPVNHQDRKVIKVKGEEMELRVKVGEIIITVEGEKLEKIMDGIEEICKRNFPFGYD
CCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEE
IYVGAFTKIKPTVTDYMKYGDISSIDPRLIGMVDASARLKDSVKMIK
EEEECEEECCCHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MKNEVKFMSEVIKVVDVKIFPHRYLKAETTEKVLNEIYDLDGIVRVIVHGQPLPKTVPFG
CCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCHHHHEEHEECCCCCCCCCCCC
PARGLPVNHQDRKVIKVKGEEMELRVKVGEIIITVEGEKLEKIMDGIEEICKRNFPFGYD
CCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEE
IYVGAFTKIKPTVTDYMKYGDISSIDPRLIGMVDASARLKDSVKMIK
EEEECEEECCCHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087