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The map label for this gene is ydcP [C]

Identifier: 15668261

GI number: 15668261

Start: 84386

End: 85609

Strand: Direct

Name: ydcP [C]

Synonym: MJ0090

Alternate gene names: 15668261

Gene position: 84386-85609 (Clockwise)

Preceding gene: 15668260

Following gene: 15668262

Centisome position: 5.07

GC content: 33.17

Gene sequence:

>1224_bases
GTGATGGTTATGGTAGAGCTTTTATCTCCAGCTAATGATTTAACATGTCTAAAAACAGCTATTGATTATGGAGCAGATGC
AGTTTATTGCGGATTGAAAGAGCTAAACATGAGAGCAAATGCAAAAAACTTTACAAGAGAGGAGTTAATAGAAGGAATTA
AATACGCTCACGATAATAATAAAAAGGTTTATCTCTGCACAAATACGGTTGTTTATGAAAATGATTTAAAGAAAGTTGAG
GAAATTTTAGATTTTGCAAATTCTGCTGAAGTTGATGCAGTTATAGTTAGTGATTTGGGAACTATGCAGTTAGCTAATGA
ATTAGGGCTGAGAGTTCATGCAAGTGTTCAATGCAACGTAACAAACTCCTTAACAGCCAAGTTTTATTCAAAGTTTGCTA
AAAGAGTTATATTATCAAGAGAACTAACCTTAAATCAAATAAAAGAGATTAGAGAAAATTTAAAGAAGGATAAAGTAGAT
TTAGAGCTTGAGGGCTTTGTTCATGGTGCTTTATGTGTTGCTATAAGTGGAAGATGCTTTTTAAGCTCCTATTTATTTGG
AAGACATGCAAACTGTGGAGACTGCCTACAACCATGTAGAAGAAAGTGGAAGTTGATTAATGAGCATCATGACGGCACTT
ATGAGATAGTTTGTGAAGGGAAATATCTTTTATCTCCAAAGGATTTATGTATGATAGAACACATCCCAGAGTTAATGGAG
GTTTTTGATTCATTTAAGATAGAGGGTAGAGCTAAAAATGCCGATTATGTGATGAGAACTACAAAGATTTATAGGGAAGC
AATAGATAGCGTTTTAGACGGCAGTTATTATGATAAGCTTGAATATTTCAAAAAAGAGCTTCAGAAGGTCTATAATAGGA
GCTATGATACTGGATTTTACTTTAGAGATATAAATAAAAATCACGACTTCCAATATGAGATTGAAGGAAATGCATCAAAG
TATAGAAAGATTGAGATTGGAAGAGTTGTTAATTTTTACAAAAAGGTTAGTGTGGCAGAGATTGAGCTATGGCATGATTT
AAAAATTGGAGATACCATATTAATAATTGGAAAAACTACTGGCTGTGTTGAGGAGGTTGTTAAATCAATGCAGATAAACC
ATAAAGATGTTGAAATTGCTAAAAAAGGAGAGAGGGTCGGAGTTAAGCTAAATCACTTAGTTAGAGAGGGAGATAGGGTT
TATCTATTAAAGGAGACAATATAA

Upstream 100 bases:

>100_bases
TAGTTGTTCCAATAGGATAATCTTTTTTATATAATGAGGTCATATTGGTTATTGCTATTTTATACTTCAAATATAATTTA
AAATTTAAAAAAATTTCTAA

Downstream 100 bases:

>100_bases
ATACAATATGGATGAACTGAAAATTTTGCTTAAGTTTAAATATTATTGCAGAATATATTCAAAAACAAACTTTAATTAAT
TTAGTAGGGATAAGAATGCT

Product: collagenase PrtC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MMVMVELLSPANDLTCLKTAIDYGADAVYCGLKELNMRANAKNFTREELIEGIKYAHDNNKKVYLCTNTVVYENDLKKVE
EILDFANSAEVDAVIVSDLGTMQLANELGLRVHASVQCNVTNSLTAKFYSKFAKRVILSRELTLNQIKEIRENLKKDKVD
LELEGFVHGALCVAISGRCFLSSYLFGRHANCGDCLQPCRRKWKLINEHHDGTYEIVCEGKYLLSPKDLCMIEHIPELME
VFDSFKIEGRAKNADYVMRTTKIYREAIDSVLDGSYYDKLEYFKKELQKVYNRSYDTGFYFRDINKNHDFQYEIEGNASK
YRKIEIGRVVNFYKKVSVAEIELWHDLKIGDTILIIGKTTGCVEEVVKSMQINHKDVEIAKKGERVGVKLNHLVREGDRV
YLLKETI

Sequences:

>Translated_407_residues
MMVMVELLSPANDLTCLKTAIDYGADAVYCGLKELNMRANAKNFTREELIEGIKYAHDNNKKVYLCTNTVVYENDLKKVE
EILDFANSAEVDAVIVSDLGTMQLANELGLRVHASVQCNVTNSLTAKFYSKFAKRVILSRELTLNQIKEIRENLKKDKVD
LELEGFVHGALCVAISGRCFLSSYLFGRHANCGDCLQPCRRKWKLINEHHDGTYEIVCEGKYLLSPKDLCMIEHIPELME
VFDSFKIEGRAKNADYVMRTTKIYREAIDSVLDGSYYDKLEYFKKELQKVYNRSYDTGFYFRDINKNHDFQYEIEGNASK
YRKIEIGRVVNFYKKVSVAEIELWHDLKIGDTILIIGKTTGCVEEVVKSMQINHKDVEIAKKGERVGVKLNHLVREGDRV
YLLKETI
>Mature_407_residues
MMVMVELLSPANDLTCLKTAIDYGADAVYCGLKELNMRANAKNFTREELIEGIKYAHDNNKKVYLCTNTVVYENDLKKVE
EILDFANSAEVDAVIVSDLGTMQLANELGLRVHASVQCNVTNSLTAKFYSKFAKRVILSRELTLNQIKEIRENLKKDKVD
LELEGFVHGALCVAISGRCFLSSYLFGRHANCGDCLQPCRRKWKLINEHHDGTYEIVCEGKYLLSPKDLCMIEHIPELME
VFDSFKIEGRAKNADYVMRTTKIYREAIDSVLDGSYYDKLEYFKKELQKVYNRSYDTGFYFRDINKNHDFQYEIEGNASK
YRKIEIGRVVNFYKKVSVAEIELWHDLKIGDTILIIGKTTGCVEEVVKSMQINHKDVEIAKKGERVGVKLNHLVREGDRV
YLLKETI

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family

Homologues:

Organism=Escherichia coli, GI87081910, Length=339, Percent_Identity=33.0383480825959, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1789548, Length=298, Percent_Identity=34.5637583892617, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1788397, Length=404, Percent_Identity=32.4257425742574, Blast_Score=162, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y090_METJA (Q57555)

Other databases:

- EMBL:   L77117
- PIR:   B64311
- RefSeq:   NP_247054.1
- ProteinModelPortal:   Q57555
- SMR:   Q57555
- MEROPS:   U32.001
- GeneID:   1450929
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0090
- NMPDR:   fig|243232.1.peg.91
- TIGR:   MJ0090
- HOGENOM:   HBG463792
- OMA:   ANCGDCL
- ProtClustDB:   CLSK876064
- BioCyc:   MJAN243232:MJ_0090-MONOMER
- GO:   GO:0006508
- InterPro:   IPR001539
- InterPro:   IPR009000

Pfam domain/function: PF01136 Peptidase_U32; SSF50447 Translat_factor

EC number: 3.4.-.- [C]

Molecular weight: Translated: 46775; Mature: 46775

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVMVELLSPANDLTCLKTAIDYGADAVYCGLKELNMRANAKNFTREELIEGIKYAHDNN
CEEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
KKVYLCTNTVVYENDLKKVEEILDFANSAEVDAVIVSDLGTMQLANELGLRVHASVQCNV
CEEEEEECEEEECHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCCEEEEEEEEEC
TNSLTAKFYSKFAKRVILSRELTLNQIKEIRENLKKDKVDLELEGFVHGALCVAISGRCF
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHEEEEEEECCHHH
LSSYLFGRHANCGDCLQPCRRKWKLINEHHDGTYEIVCEGKYLLSPKDLCMIEHIPELME
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCHHHHHHHHHHHHHH
VFDSFKIEGRAKNADYVMRTTKIYREAIDSVLDGSYYDKLEYFKKELQKVYNRSYDTGFY
HHHCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEE
FRDINKNHDFQYEIEGNASKYRKIEIGRVVNFYKKVSVAEIELWHDLKIGDTILIIGKTT
EEECCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCH
GCVEEVVKSMQINHKDVEIAKKGERVGVKLNHLVREGDRVYLLKETI
HHHHHHHHHHCCCCCHHHHHHCCCCCCEEHHHHHCCCCEEEEEEECC
>Mature Secondary Structure
MMVMVELLSPANDLTCLKTAIDYGADAVYCGLKELNMRANAKNFTREELIEGIKYAHDNN
CEEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
KKVYLCTNTVVYENDLKKVEEILDFANSAEVDAVIVSDLGTMQLANELGLRVHASVQCNV
CEEEEEECEEEECHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCCEEEEEEEEEC
TNSLTAKFYSKFAKRVILSRELTLNQIKEIRENLKKDKVDLELEGFVHGALCVAISGRCF
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHEEEEEEECCHHH
LSSYLFGRHANCGDCLQPCRRKWKLINEHHDGTYEIVCEGKYLLSPKDLCMIEHIPELME
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCHHHHHHHHHHHHHH
VFDSFKIEGRAKNADYVMRTTKIYREAIDSVLDGSYYDKLEYFKKELQKVYNRSYDTGFY
HHHCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEE
FRDINKNHDFQYEIEGNASKYRKIEIGRVVNFYKKVSVAEIELWHDLKIGDTILIIGKTT
EEECCCCCCEEEEECCCCCCEEEEHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCH
GCVEEVVKSMQINHKDVEIAKKGERVGVKLNHLVREGDRVYLLKETI
HHHHHHHHHHCCCCCHHHHHHCCCCCCEEHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087