Click here to switch to the map view.

The map label for this gene is yciO [C]

Identifier: 15668233

GI number: 15668233

Start: 60618

End: 61241

Strand: Direct

Name: yciO [C]

Synonym: MJ0062

Alternate gene names: 15668233

Gene position: 60618-61241 (Clockwise)

Preceding gene: 15668232

Following gene: 15668234

Centisome position: 3.64

GC content: 29.01

Gene sequence:

>624_bases
ATGGGACTAAAAAACAAGATAATAAAAATCTACGAACTTAATGAAGAGGAGAGAAAAAAAGTTTTAGAATTTTTAAAAAA
AGAGATATTAAATGGAAAGATTGTCATCTGTGGGACTGACACTTTATATGGTATTTCAGCAAACGCTTTAAATGAAAAAG
CAGTAAGAAAAGTTTATAATATAAAGAGGAGGGAGTTCAACAAGCCTCTATCAATATGTGTTAGAGATAAGAATGAGATT
GAAAAATACGCTTATGTAAATGATTTAGCTAAAAAAATTATTGATAAATTTCTTCCAGGACCTTTAACGATAATTTTAAA
GAAAAAACCAGGTATTCCAGATATTGTAGCTAAAGATTATATTGGGATAAGAATCCCAGATGAACCAATTATTAGAGAGC
TTTCTATAGTTCCTTTAACAACCACATCAGCAAATATTTCTGGAAAAGAAAGCCCTACTACTGTGGATGAGATAGATAAA
GAAGTGTTGAAAAAAGTAGATTATGTTATTGATATTGGAAAATGCAAATATTCAAAACCTTCTACAATTATTAAAATAGA
GGATGATAAAATAATATCAATTAGGGAGGGAGTCATCCCTATTCAAAAATTAGCGAGATGTTGA

Upstream 100 bases:

>100_bases
TGTTGTTAAAAATGAAAATAACTGCACAAAGTGTGGGGAGTGTTTAAAAGTTTGTAGGTATGGAGCAATAATACTTTATG
ATGCTTAAAAGGGATAACCT

Downstream 100 bases:

>100_bases
TACCTAAAAATAAGTAATTATAATATGATATAATTATTAAGTAAAGAACTTAATTAAAAATTGAATTTCGGGTGTTTCAA
ATGGAAAATAGAAATGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MGLKNKIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEI
EKYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAKDYIGIRIPDEPIIRELSIVPLTTTSANISGKESPTTVDEIDK
EVLKKVDYVIDIGKCKYSKPSTIIKIEDDKIISIREGVIPIQKLARC

Sequences:

>Translated_207_residues
MGLKNKIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEI
EKYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAKDYIGIRIPDEPIIRELSIVPLTTTSANISGKESPTTVDEIDK
EVLKKVDYVIDIGKCKYSKPSTIIKIEDDKIISIREGVIPIQKLARC
>Mature_206_residues
GLKNKIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEIE
KYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAKDYIGIRIPDEPIIRELSIVPLTTTSANISGKESPTTVDEIDKE
VLKKVDYVIDIGKCKYSKPSTIIKIEDDKIISIREGVIPIQKLARC

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Homo sapiens, GI58761510, Length=170, Percent_Identity=31.7647058823529, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI87081864, Length=203, Percent_Identity=26.1083743842365, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17537239, Length=182, Percent_Identity=30.2197802197802, Blast_Score=71, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6321269, Length=168, Percent_Identity=26.7857142857143, Blast_Score=72, Evalue=4e-14,
Organism=Drosophila melanogaster, GI78707274, Length=163, Percent_Identity=31.9018404907975, Blast_Score=102, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y062_METJA (Q60369)

Other databases:

- EMBL:   L77117
- PIR:   F64307
- RefSeq:   NP_247026.1
- ProteinModelPortal:   Q60369
- SMR:   Q60369
- GeneID:   1450901
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0062
- NMPDR:   fig|243232.1.peg.63
- TIGR:   MJ0062
- HOGENOM:   HBG738264
- OMA:   LTEVGPM
- ProtClustDB:   CLSK876056
- BioCyc:   MJAN243232:MJ_0062-MONOMER
- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10
- TIGRFAMs:   TIGR00057

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 23496; Mature: 23365

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLKNKIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYN
CCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCHHHHHHHHHHHHHH
IKRREFNKPLSICVRDKNEIEKYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAKDY
HHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCE
IGIRIPDEPIIRELSIVPLTTTSANISGKESPTTVDEIDKEVLKKVDYVIDIGKCKYSKP
EEEECCCCHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCC
STIIKIEDDKIISIREGVIPIQKLARC
CEEEEECCCCEEEECCCCCCHHHHHCC
>Mature Secondary Structure 
GLKNKIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYN
CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCHHHHHHHHHHHHHH
IKRREFNKPLSICVRDKNEIEKYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAKDY
HHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCE
IGIRIPDEPIIRELSIVPLTTTSANISGKESPTTVDEIDKEVLKKVDYVIDIGKCKYSKP
EEEECCCCHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCC
STIIKIEDDKIISIREGVIPIQKLARC
CEEEEECCCCEEEECCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087