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The map label for this gene is ybbB [C]

Identifier: 15668223

GI number: 15668223

Start: 52706

End: 53374

Strand: Reverse

Name: ybbB [C]

Synonym: MJ0052

Alternate gene names: 15668223

Gene position: 53374-52706 (Counterclockwise)

Preceding gene: 15668224

Following gene: 15668221

Centisome position: 3.21

GC content: 30.94

Gene sequence:

>669_bases
ATGGACGAGGGAATTTTAGCTCGGCTAATAACCTTTACAGAGGATGTTGTTTTATGTATTGTTTTAAATGATGGGAGGAA
GATGATAACTAATGGTAAAAAAATATTGGCTGGAAAAATTGAAGGAGAGCTTGCTTCTTTTATATTATCTGCCTCTAAAG
AATTTTTAGAAGATAAAAAGGTCGGTGTAAAAAAATTTAAAGATTACGACATATACTTTGAAAGAATAGATATCAACAAG
TTTTTAAAATCCATTGGGGGAGAATTTGTTAAAAATACAATAACTGTTAGTGAGTTGTTAGAGTTGATAAAAAAAGAGGA
TGTTATTATTGTAGATACAAGAAGTCCAAGAGAATTTAAGGAGGAAACACTCCCTGGAGCTATAAACATTCCACTATTTT
TGGATGATGAGCATGCATTAATTGGAAAGACCTACAAGCAGGAAAGTAGAGAAAAAGCTATAGAAATAGCAACAGATATT
GTTGAGAAAAGCTTAAAAAGAATTTTAAATGAAGCAAAAAAACTTGATAGGGATAAGTTAATTGTTGTTTTCTGTGCAAG
AGGAGGGATGAGGAGTCAAACAATGGCTTTAATTTTACAACTATTGGGTTTTAAAGTTAAAAGATTAATAGGTGGCTTTA
AAGCGTTTAAGCATGCAGTAGATAAATAA

Upstream 100 bases:

>100_bases
TTAATTGTTTATAATGAGGATGTTAAAAAATCAGCTAAAATAATTGATGAATTTATTAAGAAAAAATTAAAGGAGCATAA
TTTAATTTAAGAGGGAAAAC

Downstream 100 bases:

>100_bases
AAAATTTAAATTTATAAAAGTTTTAAATGTCCTGTTATTTTATCTATTTTCTCATCTTTCTCAGGGCCTATGGCTACAGC
TGTCAAAGTTCCTGGCTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MDEGILARLITFTEDVVLCIVLNDGRKMITNGKKILAGKIEGELASFILSASKEFLEDKKVGVKKFKDYDIYFERIDINK
FLKSIGGEFVKNTITVSELLELIKKEDVIIVDTRSPREFKEETLPGAINIPLFLDDEHALIGKTYKQESREKAIEIATDI
VEKSLKRILNEAKKLDRDKLIVVFCARGGMRSQTMALILQLLGFKVKRLIGGFKAFKHAVDK

Sequences:

>Translated_222_residues
MDEGILARLITFTEDVVLCIVLNDGRKMITNGKKILAGKIEGELASFILSASKEFLEDKKVGVKKFKDYDIYFERIDINK
FLKSIGGEFVKNTITVSELLELIKKEDVIIVDTRSPREFKEETLPGAINIPLFLDDEHALIGKTYKQESREKAIEIATDI
VEKSLKRILNEAKKLDRDKLIVVFCARGGMRSQTMALILQLLGFKVKRLIGGFKAFKHAVDK
>Mature_222_residues
MDEGILARLITFTEDVVLCIVLNDGRKMITNGKKILAGKIEGELASFILSASKEFLEDKKVGVKKFKDYDIYFERIDINK
FLKSIGGEFVKNTITVSELLELIKKEDVIIVDTRSPREFKEETLPGAINIPLFLDDEHALIGKTYKQESREKAIEIATDI
VEKSLKRILNEAKKLDRDKLIVVFCARGGMRSQTMALILQLLGFKVKRLIGGFKAFKHAVDK

Specific function: Unknown

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain

Homologues:

Organism=Escherichia coli, GI1786712, Length=113, Percent_Identity=31.858407079646, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y052_METJA (Q60359)

Other databases:

- EMBL:   L77117
- PIR:   D64306
- RefSeq:   NP_247016.1
- ProteinModelPortal:   Q60359
- GeneID:   1450891
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0052
- NMPDR:   fig|243232.1.peg.53
- TIGR:   MJ0052
- HOGENOM:   HBG541262
- OMA:   MDENILS
- ProtClustDB:   CLSK876048
- BioCyc:   MJAN243232:MJ_0052-MONOMER
- InterPro:   IPR001763
- Gene3D:   G3DSA:3.40.250.10
- SMART:   SM00450

Pfam domain/function: PF00581 Rhodanese; SSF52821 Rhodanese-like

EC number: NA

Molecular weight: Translated: 25151; Mature: 25151

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEGILARLITFTEDVVLCIVLNDGRKMITNGKKILAGKIEGELASFILSASKEFLEDKK
CCCHHHHHHHHHHCCEEEEEEECCCCEEHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
VGVKKFKDYDIYFERIDINKFLKSIGGEFVKNTITVSELLELIKKEDVIIVDTRSPREFK
HHHHHHCCHHHEEEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHH
EETLPGAINIPLFLDDEHALIGKTYKQESREKAIEIATDIVEKSLKRILNEAKKLDRDKL
HHCCCCEEECEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IVVFCARGGMRSQTMALILQLLGFKVKRLIGGFKAFKHAVDK
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDEGILARLITFTEDVVLCIVLNDGRKMITNGKKILAGKIEGELASFILSASKEFLEDKK
CCCHHHHHHHHHHCCEEEEEEECCCCEEHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
VGVKKFKDYDIYFERIDINKFLKSIGGEFVKNTITVSELLELIKKEDVIIVDTRSPREFK
HHHHHHCCHHHEEEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHH
EETLPGAINIPLFLDDEHALIGKTYKQESREKAIEIATDIVEKSLKRILNEAKKLDRDKL
HHCCCCEEECEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IVVFCARGGMRSQTMALILQLLGFKVKRLIGGFKAFKHAVDK
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087