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The map label for this gene is rpl21e

Identifier: 15668210

GI number: 15668210

Start: 40098

End: 40394

Strand: Reverse

Name: rpl21e

Synonym: MJ0040

Alternate gene names: 15668210

Gene position: 40394-40098 (Counterclockwise)

Preceding gene: 15668211

Following gene: 15668209

Centisome position: 2.43

GC content: 37.04

Gene sequence:

>297_bases
ATGGTTCAAATGAGTGAAGGATTTAGAAGAAAAACAAGAAAGAAGTTATCAAAACACCCAAGAGAAAGAGGTCTCTATCC
AATAACAAGAGCTTTGAGAGAGTTTAAAGAAGGAGAGTATGTCCATATAGTTATAGATCCATCAGTCCATAAGGGAATGC
CACACCCAAGATTTCATGGAAGAACAGGGATTGTTGTTGGTAAGCAGGGAAGAGCATTTATTGTTAAAGTAAGAGATGGA
GGAAAATACAAACAAATCATTGCTTACCCACAGCATTTAAGACCTGCTACTGCATAA

Upstream 100 bases:

>100_bases
AACCTTTTAGAAAAAGGTTGATCAAAACAGATGCATTAAGTTGCCTCTTTCAGAGGCAATTAATGCCTCATTTAAAAACC
TATTCAAAAAGGTGAGAATT

Downstream 100 bases:

>100_bases
ATATTTAATTTCATAAAAATCTCTATTAATTAAACACTTTAATTATTTTTCCTTGATTTAAATACAACTCCAGAAATAAA
TTATTAAATTATATTTTTAT

Product: 50S ribosomal protein L21e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MVQMSEGFRRKTRKKLSKHPRERGLYPITRALREFKEGEYVHIVIDPSVHKGMPHPRFHGRTGIVVGKQGRAFIVKVRDG
GKYKQIIAYPQHLRPATA

Sequences:

>Translated_98_residues
MVQMSEGFRRKTRKKLSKHPRERGLYPITRALREFKEGEYVHIVIDPSVHKGMPHPRFHGRTGIVVGKQGRAFIVKVRDG
GKYKQIIAYPQHLRPATA
>Mature_98_residues
MVQMSEGFRRKTRKKLSKHPRERGLYPITRALREFKEGEYVHIVIDPSVHKGMPHPRFHGRTGIVVGKQGRAFIVKVRDG
GKYKQIIAYPQHLRPATA

Specific function: Unknown

COG id: COG2139

COG function: function code J; Ribosomal protein L21E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL21_METJA (P54013)

Other databases:

- EMBL:   L77117
- RefSeq:   NP_247003.1
- ProteinModelPortal:   P54013
- SMR:   P54013
- GeneID:   1450878
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0040
- NMPDR:   fig|243232.1.peg.40
- TIGR:   MJ0040
- HOGENOM:   HBG497499
- OMA:   RFHGKTG
- ProtClustDB:   PRK04306
- BioCyc:   MJAN243232:MJ_0040-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00369
- InterPro:   IPR001147
- InterPro:   IPR022856
- InterPro:   IPR018259
- InterPro:   IPR008991
- PANTHER:   PTHR20981

Pfam domain/function: PF01157 Ribosomal_L21e; SSF50104 Transl_SH3_like

EC number: NA

Molecular weight: Translated: 11330; Mature: 11330

Theoretical pI: Translated: 11.63; Mature: 11.63

Prosite motif: PS01171 RIBOSOMAL_L21E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQMSEGFRRKTRKKLSKHPRERGLYPITRALREFKEGEYVHIVIDPSVHKGMPHPRFHG
CCCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCC
RTGIVVGKQGRAFIVKVRDGGKYKQIIAYPQHLRPATA
CCEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MVQMSEGFRRKTRKKLSKHPRERGLYPITRALREFKEGEYVHIVIDPSVHKGMPHPRFHG
CCCCCHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCC
RTGIVVGKQGRAFIVKVRDGGKYKQIIAYPQHLRPATA
CCEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087