| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15646175
GI number: 15646175
Start: 1650094
End: 1650645
Strand: Reverse
Name: Not Available
Synonym: HP1568
Alternate gene names: NA
Gene position: 1650645-1650094 (Counterclockwise)
Preceding gene: 15646176
Following gene: 15646174
Centisome position: 98.97
GC content: 40.4
Gene sequence:
>552_bases ATGCGTTGGTGGTGTTTTTTGGTGTGTTGTTTTGGTATTTTAAGCGTGATGGACGCTAAAAAATTAGAGAATAAGAATTT GAAAAAAGAAAGAGAGCTTTTAGAGATTACTGGCAACCAATTTGTAGCGAACGACAAAACCAAAACCGCTGTTATTCAAG GCAATGTGCAGATCAAAAAGGGTAAAGACCGGTTGTTTGCGGACAAGGTGAGCGTGTTTTTAAACGATAAACGAAAGCCA GAGCGCTATGAAGCCACAGGGAACACGCATTTTAACATCTTTACAGAGGACAATCGTGAAATCAGCGGGAGTGCTGACAA GCTCATTTATAACGCGCTGAATGGGGAATACAAATTATTGCAAAATGCGGTGGTTAGAGAAGTGGGGAAATCCAATGTCA TCACCGGCGATGAAATCATTTTAAACAAAACTAAGGGTTATGCTGATGTGTTGGGGAGCGCGAAACGGCCCGCTAAATTC GTGTTTGATATGGAAGATATTAATGAAGAAAATCGTAAGGCTAAATTGAAGAAGAAAGGCGAAAAACCATGA
Upstream 100 bases:
>100_bases TTATTGAAGCTCAAAGCATTCAAGCGCATTTATTCTTAGATGAAATCAAACAAAGCCAAAAAGAAAAGAAAAAATTCCCC ACTTTCAAAGGAGGTTTTTA
Downstream 100 bases:
>100_bases TTGTCATTAAAGACGCTCATTTTCTCACTTCTTCAAGCCAACTTTTTCAATGCCCTGCGAGTTTGACTTCTGAAATGGTG GTTTTAGGGCGCAGCAATGT
Product: hypothetical protein
Products: NA
Alternate protein names: Cell Envelope Biogenesis Protein YhbN; Lipopolysaccharide Transport Periplasmic Protein LptA; OstA-Like Protein
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKKGKDRLFADKVSVFLNDKRKP ERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLLQNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKF VFDMEDINEENRKAKLKKKGEKP
Sequences:
>Translated_183_residues MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKKGKDRLFADKVSVFLNDKRKP ERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLLQNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKF VFDMEDINEENRKAKLKKKGEKP >Mature_183_residues MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKKGKDRLFADKVSVFLNDKRKP ERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLLQNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKF VFDMEDINEENRKAKLKKKGEKP
Specific function: Unknown
COG id: COG1934
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20878; Mature: 20878
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKK CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCEEEEECCEEEEC GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLL CCCHHHHHHHHHEECCCCCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHH QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG HHHHHHHCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCEEEEEHHHCCCHHHHHHHHHCC EKP CCC >Mature Secondary Structure MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKK CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCEEEEECCEEEEC GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLL CCCHHHHHHHHHEECCCCCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHH QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG HHHHHHHCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCEEEEEHHHCCCHHHHHHHHHCC EKP CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA