| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15646067
GI number: 15646067
Start: 1527772
End: 1528086
Strand: Reverse
Name: Not Available
Synonym: HP1458
Alternate gene names: 15646067
Gene position: 1528086-1527772 (Counterclockwise)
Preceding gene: 15646068
Following gene: 15646066
Centisome position: 91.62
GC content: 42.86
Gene sequence:
>315_bases ATGTCAGAAATGATTAACGGGAAGAATTACGCAGAGAAAATCGCTCATCAAGCGGTGGTGGTTAATGTGGGGGCGAGCTG GTGCCCGGATTGCAGAAAGATTGAGCCGATCATGGAAAATTTAGCCAAAACTTACAAAGGCAAGGTGGAATTTTTTAAGG TTTCTTTTGATGAGAGCCAGGATCTCAAAGAGAGCTTAGGCATCCGCAAGATCCCTACTTTGATTTTTTACAAAAACGCC AAAGAAGTGGGGGAAAGGCTTGTAGAACCTAGCTCTCAAAAACCGATTGAAGACGCTCTAAAAGCGTTATTGTAA
Upstream 100 bases:
>100_bases GTTGCATGCGTTTATGGCTAATGCGGCTAATGTTAAAGGGGATTAGCTTACGAGTTATGCTATACTTCAAAGTTGGGGGA AATAAAAAATAAGGATTATC
Downstream 100 bases:
>100_bases GGGGTATCATAAAGGGCGTTATTAAAGAGCCTTATTGTAAAAATAAGAGTTCACAGAATCTTTTTAGCCCCTTTTTTTAT AAAGGGGCTAACTTCAAATA
Product: thioredoxin
Products: NA
Alternate protein names: Trx [H]
Number of amino acids: Translated: 104; Mature: 103
Protein sequence:
>104_residues MSEMINGKNYAEKIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNA KEVGERLVEPSSQKPIEDALKALL
Sequences:
>Translated_104_residues MSEMINGKNYAEKIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNA KEVGERLVEPSSQKPIEDALKALL >Mature_103_residues SEMINGKNYAEKIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNAK EVGERLVEPSSQKPIEDALKALL
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788936, Length=65, Percent_Identity=41.5384615384615, Blast_Score=62, Evalue=6e-12, Organism=Escherichia coli, GI87082331, Length=90, Percent_Identity=35.5555555555556, Blast_Score=61, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: 1.8.1.8 [C]
Molecular weight: Translated: 11745; Mature: 11614
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEMINGKNYAEKIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQ CCCCCCCHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCH DLKESLGIRKIPTLIFYKNAKEVGERLVEPSSQKPIEDALKALL HHHHHCCCCCCCHHHEECCHHHHHHHHCCCCCCCCHHHHHHHHC >Mature Secondary Structure SEMINGKNYAEKIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQ CCCCCCHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCH DLKESLGIRKIPTLIFYKNAKEVGERLVEPSSQKPIEDALKALL HHHHHCCCCCCCHHHEECCHHHHHHHHCCCCCCCCHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA