Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 15646032

GI number: 15646032

Start: 1494708

End: 1494962

Strand: Reverse

Name: Not Available

Synonym: HP1423

Alternate gene names: NA

Gene position: 1494962-1494708 (Counterclockwise)

Preceding gene: 15646034

Following gene: 15646031

Centisome position: 89.63

GC content: 40.78

Gene sequence:

>255_bases
ATGCGAATAGACAAATTTTTACAATCAGTGGGTTTAGTGAAGCGGCGCGTTTTAGCGACAGATATGTGTAATGTGGGGGC
GGTATGGCTTAATGGGAGTTGCGCTAAGGCTAGTAAAGAAGTGAAAGCGGGCGATACGATTAGCTTGCACTATTTAAAAG
GGATAGAAGAATACACGATTTTACAAATCCCCGCTTTAAAAAATGTGCCACGAAAAGACACGCACCTTTATATCGCTCCT
AAAACAAAAGAATAA

Upstream 100 bases:

>100_bases
CAAATTCCTTAAAAAGAGTGGTGGCTGAATGCTAACATGCTAAAACTAAAACCCTTATAAGTTATGGATAAAAACTTAAA
GAATAGGGTAAAATAAACGC

Downstream 100 bases:

>100_bases
AGACAAAAGACTAAGGATTAATCAGTGGAAGAATACAAAGACACCCTAAACTTAAACACAACCACCTTTTCTATGAAGGG
GAATTTGAGCGTTAATGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAP
KTKE

Sequences:

>Translated_84_residues
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAP
KTKE
>Mature_84_residues
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAP
KTKE

Specific function: Unknown

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1423_HELPY (O25966)

Other databases:

- EMBL:   AE000511
- PIR:   G64697
- RefSeq:   NP_208214.1
- PDB:   2K6P
- PDBsum:   2K6P
- ProteinModelPortal:   O25966
- SMR:   O25966
- DIP:   DIP-3730N
- MINT:   MINT-160042
- GeneID:   899872
- GenomeReviews:   AE000511_GR
- KEGG:   hpy:HP1423
- NMPDR:   fig|85962.1.peg.1410
- TIGR:   HP_1423
- HOGENOM:   HBG586251
- OMA:   EEYTILQ
- ProtClustDB:   CLSK2517384
- InterPro:   IPR002942
- SMART:   SM00363

Pfam domain/function: PF01479 S4

EC number: NA

Molecular weight: Translated: 9385; Mature: 9385

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHEECCCCCEEE
LQIPALKNVPRKDTHLYIAPKTKE
EECCCCCCCCCCCCEEEEECCCCC
>Mature Secondary Structure
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHEECCCCCEEE
LQIPALKNVPRKDTHLYIAPKTKE
EECCCCCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185